Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02063 ATGGCTTCCATTTCCAGTACCATTGGAACTTCTCCCTCTCCGCACCTTCCCAAAACCCCAACCTCCTTCTCACTTCACAACACTTCCCGTTTCGCCCCCCTTCTCCGTCTCCGACCAAACCACAAAACCCCCGCCGTTTCTTTCGTTATCTCCGCAATTGCCACTCCCAACACTCCCACACTCACCGCTCAAGAAGCCTTCAAGGGTTTTGACATCGATAACGACCAGCTCAACCACCTCCCTGTTGCCGTCAGCAAAGACGAACTCGACATTTCCAAACTTCAGTTTCCTTCCCAGCTTGTGGACTCGCTCCGAAGAAGAGGAATTACCAATCTCTTCCCCATTCAGAGAGCTGTCTTGCTACCTGCAATAGAAGGTAGAGATATCATTGCTCGTGCAAGGACTGGGACCGGGAAGACGCTAGCATTTGGAATTCCAATTATCAAGAGTCTCACTGAGAATGGACAAAGCACAATGAGGCGATCTGGGCGACTTCCTAAAGTGTTGGTCCTTGCACCAACTAGGGAGTTAGCTAAGCAAGTAGAGAAGGAGATACAAGAATCTGCACCTTATCTAAACACTGTTTGTGTTTATGGCGGTGTTTCTTATGATATTCAGAGGAATGCGCTTTCGCGTGGTGTTGATGTTGTGGTCGGAACACCTGGAAGGCTAATTGACTTGATAAATGGGAAAAGCCTTAGACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCAGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAAAAGATCCCGTCTCAGCGGCAAATCATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCATTGACTATTGATTTGGTCGGTGATAGAGAAGAAAAGCTTGCTGAGGGGATCAAACTTTATGCTGTACCAGCCACTGCGTCATCAAAGCGGAGAATTCTTTATGGTCTTATAAATGCATATGGAAAGGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGATGCTGATGAAATAGCACTGTCATTATCAAATAGTATAGCTTCTAAAGCACTGCATGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAATGGTTTTCGGCAAGGGAGATTCACAGTGCTTGTTGCTACTGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGACTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTTCACCGCTCTGGTCGTACTGGACGTGCTGGAAAAGAGGGTGCTGCTGTAGTAATGTACACCGCTACCCAGAAAAGAACTGTTATGTTGTTTGAGCGTGACATAGGCTCCCAGTTTGAATTTATTAGTGCACCACCTATGCAAGATTTACCAGAATTATCTACCAGGTTAGGCGTTGATACACTTGATAGAGATAGAAGTATTCGGAGAGGTTCTAGGGATCAGAGAGGTTATAGAACTGGTGGGGATGACTGGTTAACCGGTGGTAGGCGATCAGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCAGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCAGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCTGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCTGGTGGGGATGACTTTTTAAGTGGAGGTAGACGATCTGGTGGGGATGACTTTTTAAGTGGAGGTAGACGGTCAAGCGGATATTCGTCAAACAGAACTTCTTCGCCAAACAGATATTCATCGCCAAACAGATCTTCATCACCAAACAGAGGGGCCTGTTTTAATTGCGGAGAATCAGGGCATCTGGCGTCAGAGTGTCCCAAAAATCAAGACTTTTTTTAG 1896 0.4636 MASISSTIGTSPSPHLPKTPTSFSLHNTSRFAPLLRLRPNHKTPAVSFVISAIATPNTPTLTAQEAFKGFDIDNDQLNHLPVAVSKDELDISKLQFPSQLVDSLRRRGITNLFPIQRAVLLPAIEGRDIIARARTGTGKTLAFGIPIIKSLTENGQSTMRRSGRLPKVLVLAPTRELAKQVEKEIQESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGKSLRLSEIQYLVLDEADQMLAVGFEEDVEVILEKIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVPATASSKRRILYGLINAYGKGGKTIVFTRTKRDADEIALSLSNSIASKALHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMYTATQKRTVMLFERDIGSQFEFISAPPMQDLPELSTRLGVDTLDRDRSIRRGSRDQRGYRTGGDDWLTGGRRSGGDDWSSGGRRSGGDDWSSGGRRSGGDDWSSGGRRSGGDDWSSGGRRSGGDDFLSGGRRSGGDDFLSGGRRSSGYSSNRTSSPNRYSSPNRSSSPNRGACFNCGESGHLASECPKNQDFF 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02063 631 Gene3D - 601 629 - -
Vifa3g02063 631 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 87 473 - -
Vifa3g02063 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 450 IPR027417 -
Vifa3g02063 631 ProSiteProfiles Zinc finger CCHC-type profile. 611 626 IPR001878 GO:0003676|GO:0008270
Vifa3g02063 631 MobiDBLite consensus disorder prediction 581 610 - -
Vifa3g02063 631 CDD SF2_C_DEAD 310 439 - -
Vifa3g02063 631 Pfam DEAD/DEAH box helicase 113 285 IPR011545 GO:0003676|GO:0005524
Vifa3g02063 631 SUPERFAMILY Retrovirus zinc finger-like domains 591 629 IPR036875 GO:0003676|GO:0008270
Vifa3g02063 631 Gene3D - 90 300 IPR027417 -
Vifa3g02063 631 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g02063 631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 296 IPR014001 -
Vifa3g02063 631 FunFam ATP-dependent RNA helicase RhlE 82 299 - -
Vifa3g02063 631 SMART ultradead3 108 313 IPR014001 -
Vifa3g02063 631 MobiDBLite consensus disorder prediction 483 610 - -
Vifa3g02063 631 SMART helicmild6 350 430 IPR001650 -
Vifa3g02063 631 MobiDBLite consensus disorder prediction 483 499 - -
Vifa3g02063 631 Pfam Helicase conserved C-terminal domain 322 430 IPR001650 -
Vifa3g02063 631 CDD DEADc 100 297 - -
Vifa3g02063 631 Gene3D - 317 476 IPR027417 -
Vifa3g02063 631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 477 IPR001650 -
Vifa3g02063 631 SMART c2hcfinal6 610 626 IPR001878 GO:0003676|GO:0008270
Vifa3g02063 631 Pfam Zinc knuckle 610 626 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02063 Vifa-Chr3 514691931 514696309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02063 115 452 Eukaryotic Initiation Factors Gene Family AT1G72730 36.919 6.88e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02063 - K16911 tpra:123902197 808.52