Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02060 ATGGTATGCTGGTCTCTCCCTAATGTTTGTGTTAAAATGTCAACCACGAGGCCGAGCCAATCGTCCAACAATTCAGGGAGGTCAAGAAATAGTGCTAGGATTATTGCTCAGACGACTGTAGATGCGAAGATTCATGCAAATTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCGAGTTCGGTGCGTGTGTCTGGCTCGGTGGATGGAGATCAACAACCAAGGTCGAACAAAGTAACAACGGCTTACCTCAATCATATACAGAGAGATAAGCAGATCCAGCCTTTTGGGTGCTTGTTAGCGCTAGATGAGAAAACGTGCAAGGTTATTGCGTATAGTGAGAATGCGCCTGAGATGCTGACTATGGTGAGTCATGCTGTTCCTAGTGTTGGCGACCATCCTGCCCTTGGTATTGGGACTGATATAAGGACTGTTTTCACTGCACCGAGTGCTTCTGCGTTGCAGAAGGCGCTAGGGTTTGCGGAGGTTTCACTTCTTAACCCGATTCTTGTTCATTGCAAGACTTCCGGGAAGCCATTTTACGCGATCATTCATCGTGTTACTGGTAGTTTGATCATTGACTTTGAGCCGGTGAAGCCTTATGAAGTTCCTATGACTGCCGCGGGGGCCTTGCAATCTTACAAACTTGCTGCTAAAGCAATTACAAGATTGCAATCTTTGGCTAGTGGCAGCATGGAAAGGCTTTGTGATACCATGGTTCAAGAAGTTTTTGAACTAACGGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTGATTGCTGAGATAGCAAAGCCAGGCCTAGAGCCATATCTTGGTCTGCACTATCCGGCAACAGATATTCCCCAGGCTGCGCGGTTTCTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGACGAAAAACTCCCATCTGGTTTGACTCTGTGCGGTTCAACCTTAAGAGCTCCACATAGTTGCCATTTGCAGTACATGGCTAACATGGATTCAATTGCTTCTTTGGTTATGGCAGTAGTCGTCAATGACAGCGACGAAGATGGAGATAGCGCTGACGCAGTTCTCCCGCAAAAGAAAAAGAGACTTTGGGGATTGGTAGTTTGTCATAACACTACTCCAAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTGGCTCAAGTTTTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTCTGGAGAAGAATATCCTGCGCACACAGACGCTGTTGTGTGATATGTTGATGCGAGACGCACCCTTAGGTATTGTATCACAAAGCCCTAATATAATGGATCTAGTGAAATGTGATGGGGCTGCACTCTTGTACAGAAACAAGTTATGGATATTAGGAGCGGCACCGACTGAATCTCAAATAAGAGAGATAGCTTTATGGATGTCTGAGTATCATACAGATTCAACAGGTTTGAGTACAGATAGCTTGTCGGACGCAGGGTTTCCAGGGGCTCTTTCTCTTAGTGATACTGTATGTGGAATGGCAGCTGTTAGAATAACTGCAAAAGACATAGTTTTCTGGTTTAGGTCGTACACTGCTGCAGAAATCCGATGGGGAGGTGCAAAGCATGAACCAGGCGAACAGGACGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAAGCTAGAAGTGTGCCATGGAAAGACTTTGAAATGGATGCTATTCACTCGTTGCAGTTAATACTCAGAAATGCGTCCAAAGATACAGATATTATAGATATGAACACGAAAGCAATCAATACAAGACTAAATGATTTGAAGATTGAAGGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATGGTTAGGTTAATTGAAACAGCAACAGTGCCTATTTTGGCAGTGGATGTTGATGGGACAGTCAATGGATGGAATATAAAAATCGCCGAGTTAACAGGTCTTCCCGTTGGCGAAGCTATTGGAAAACATTTACTCACCCTGGTTGAGGATTCTTCAGCTAATATAGTCAAGAAGATGCTCAACTTGGCACTGCGGGGTGAAGAAGAGAAGAATGTCCAATTCGAGATAAAAACACATGGGGATCAGGTCGAATCCGGTCCTATTAGTTTGATAGTTAATGCGTGTGCAAGCAGGGATCTTCGTGAAAATGTAGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACTGTCATGGACAAATTCACCCGAATCGAAGGCGATTACAAAGCAATTGTGCAGAATCCAAATCAATTAATCCCTCCTATATTCGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGATTAAGTTAACCGGATGGAAGCGTGAGGAGGTGATGGATAAAATGCTTCTAGGAGAGGTTTTCGGAACTCAAATGTCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTCGGCATTGTACTGAATAAAGCCATGACCGGTTTGGAAACAGAAAAGGTCGCGTTTGGTTTCTCCTCACGGAAAGGCAAGTATGTAGAGTGCCTACTTTCAGTGAGTAAGAAAATCGACGCAGAGGGCCTAGTTACCGGAGTCTTCTGTTTCTTGCAGTTAGCTAGCCCTGAGCTGCAACAAGCGTTACATATTCAGCGCCTATCCGAACAAACTGCTCTCAAGAGACTGAAAGTACTAACTTATATGAAAAGGCAGATCAGGAATCCGTTGGCTGGGATTATGTTTTCCAGTAAAATGCTGGAGGGTACTGACTTGGAAACCGAACAAAAACAAATAGTGAACACTAGTTCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTTGACGACTCTGATCTCGACGGCATCATTGATGGGTACTTGGATCTTGAGATGGCTGAATTCACTTTACATGAGGTACTGGTTACCTCTCTTAGTCAAGTTATGAATAGGAGTAACACAAAGGGTATCCGAATAGCCAATGATGTTGCAGAGCATATCGCGAAGGAAACCTTGTATGGTGATAGTCTTAGGCTTCAGCAGGTCCTAGCTGACTTCTTACTAATTTCCATCAATTCCACACCAAATGGAGGCCAGGTTGTTATAGCAGCCTCCTTAACTAAAGAACAGTTGGGAAAATCTGTCCATCTTGTTAACTTGGAGCTCAGCATAACACATGGTGGCAGTGGCGCGCCAGAAGCGGCACTGAACCAGATGTTTGGAAATAATGTGCTAGAATCTGAGGAGGGTATTAGCCTACACATCAGTAGGAAGTTGCTAAAGCTCATGAATGGAGATGTTCGTTATTTAAAAGAAGCCGGAAAATCATCGTTTATTCTGGCTGTCGAACTTGCAGCAGCTCATAAGTTGAAAGGTTGA 3411 0.438 MVCWSLPNVCVKMSTTRPSQSSNNSGRSRNSARIIAQTTVDAKIHANFEESGSSFDYSSSVRVSGSVDGDQQPRSNKVTTAYLNHIQRDKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPSGLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKLWILGAAPTESQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALSLSDTVCGMAAVRITAKDIVFWFRSYTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDMNTKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIGKHLLTLVEDSSANIVKKMLNLALRGEEEKNVQFEIKTHGDQVESGPISLIVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVAFGFSSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMKRQIRNPLAGIMFSSKMLEGTDLETEQKQIVNTSSQCQRQLSKILDDSDLDGIIDGYLDLEMAEFTLHEVLVTSLSQVMNRSNTKGIRIANDVAEHIAKETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGSGAPEAALNQMFGNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILAVELAAAHKLKG 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02060 1136 MobiDBLite consensus disorder prediction 52 75 - -
Vifa3g02060 1136 PANTHER OS08G0260000 PROTEIN 79 966 - -
Vifa3g02060 1136 NCBIfam PAS domain S-box protein 636 752 IPR000014 -
Vifa3g02060 1136 FunFam Phytochrome 625 756 - -
Vifa3g02060 1136 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 403 IPR016132 -
Vifa3g02060 1136 Gene3D - 969 1133 IPR036890 -
Vifa3g02060 1136 Gene3D - 211 574 IPR029016 -
Vifa3g02060 1136 Coils Coil 410 430 - -
Vifa3g02060 1136 ProSiteProfiles Histidine kinase domain profile. 913 1132 IPR005467 -
Vifa3g02060 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 198 IPR035965 -
Vifa3g02060 1136 Gene3D PAS domain 775 885 - -
Vifa3g02060 1136 Pfam Phytochrome region 426 598 IPR013515 GO:0006355|GO:0009584
Vifa3g02060 1136 Gene3D PAS domain 623 761 - -
Vifa3g02060 1136 ProSiteProfiles PAS repeat profile. 762 814 IPR000014 -
Vifa3g02060 1136 Pfam PAS fold 632 746 IPR013767 GO:0006355
Vifa3g02060 1136 Pfam PAS fold 762 884 IPR013767 GO:0006355
Vifa3g02060 1136 Pfam PAS fold 81 197 IPR013654 GO:0006355
Vifa3g02060 1136 ProSiteProfiles PAS repeat profile. 629 699 IPR000014 -
Vifa3g02060 1136 CDD PAS 640 746 IPR000014 -
Vifa3g02060 1136 SMART pas_2 631 697 IPR000014 -
Vifa3g02060 1136 SMART pas_2 761 830 IPR000014 -
Vifa3g02060 1136 Gene3D - 886 967 - -
Vifa3g02060 1136 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 974 1122 IPR036890 -
Vifa3g02060 1136 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1018 1126 IPR003594 -
Vifa3g02060 1136 Gene3D PAS domain 85 333 - -
Vifa3g02060 1136 Pfam His Kinase A (phospho-acceptor) domain 909 962 IPR003661 GO:0000155|GO:0007165
Vifa3g02060 1136 SMART HKATPase_4 1018 1130 IPR003594 -
Vifa3g02060 1136 CDD PAS 773 884 IPR000014 -
Vifa3g02060 1136 PIRSF Phytochrome_conventional 11 1136 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vifa3g02060 1136 Gene3D - 418 591 IPR043150 -
Vifa3g02060 1136 PRINTS Phytochrome signature 724 741 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 744 764 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 443 463 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 528 547 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 561 579 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Vifa3g02060 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 776 882 IPR035965 -
Vifa3g02060 1136 CDD HisKA 911 961 IPR003661 GO:0000155|GO:0007165
Vifa3g02060 1136 SMART gaf_1 230 423 IPR003018 GO:0005515
Vifa3g02060 1136 SUPERFAMILY GAF domain-like 421 597 - -
Vifa3g02060 1136 SUPERFAMILY GAF domain-like 210 410 - -
Vifa3g02060 1136 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Vifa3g02060 1136 FunFam Phytochrome 418 549 - -
Vifa3g02060 1136 Pfam GAF domain 230 413 IPR003018 GO:0005515
Vifa3g02060 1136 SMART HisKA_10 906 967 IPR003661 GO:0000155|GO:0007165
Vifa3g02060 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 635 742 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02060 Vifa-Chr3 513384780 513388873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02060 13 1133 Histidine Kinase Gene Family AT1G09570 78.520 0.0 1850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02060 K12120 - gmx:100790763 1904.03