Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02059 ATGGGAATCAAGGGTTTAACCAAGCTTTTAGCCGATAATGCCCCAACATCCATGAAGGAGAACAAATTTGAGACTTACTTTGGCCGTAAGATTGCTGTTGATGCCAGCATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAGCTGAAATGCTTACTAATGAAGCCGGCGAAGTTACTAGTCATTTGCAAGGGATGTTTTCTCGGACAATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGATATGAAGAATCAAGAGCTGAAAAAACGTCTCTCAAGGAGAGCTGAGGCTGAAGAGGGTTTGTCCGTAGCCATAGAGGCTGACAATAAGGAAGATATTGAAAAGTTCAGTAAACGGACAGTAAAGGTGACTAAACAACATAATGAAGACTGCAAAAAACTTTTGAGACTCATGGGGGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGCAAAGCTGGAAAGGTGTATGCTGTGGCTTCTGAAGATATGGATTCCTTAACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCAAAGAAGGTTCCTGTAATGGAATTTGACATTGCAAAGATTTTGGCGGAGCTAGATCTGACCATGGACCAATTTATTGACCTGTGCATTCTTTCTGGATGTGATTACTGTGACAACATTCGAGGTATTGGGGGCCTAACAGCTTTGAAGCTCATACGCCAACACGGCTCTATTGAAAACATACTGGAAAACCTAAACAAAGACAGGTACCAGATAGCAGATGATTGGCCATATCAGGAGGCTCGACGACTTTTTAAAGAACCACTGGTCTCAACTGATGATGAAGAACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGGTTCAGCAGTGACAGGGTGACAAGGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCTGTGCCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGGTCTTTCAAACCAGCAATTGATCATAAGATGTCCTCTCTGCAAATTTCTAACAGTTCAAGGTCCATGATTTTTGGCAAGTTGAGAATGCCGATCTATAATGTGGGTTCCGAGCTTTCTGTGCCATTGTCTAGAGGTGTCTGCTTTGGTGCCTGA 1251 0.4285 MGIKGLTKLLADNAPTSMKENKFETYFGRKIAVDASMSIYQFLIVVGRSGAEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPDMKNQELKKRLSRRAEAEEGLSVAIEADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFDIAKILAELDLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIENILENLNKDRYQIADDWPYQEARRLFKEPLVSTDDEELNLKWSPPDEEGLITFLVNENGFSSDRVTRAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKESKCMLRSFKPAIDHKMSSLQISNSSRSMIFGKLRMPIYNVGSELSVPLSRGVCFGA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02059 416 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Vifa3g02059 416 Gene3D - 2 218 - -
Vifa3g02059 416 FunFam Flap endonuclease 1 219 286 - -
Vifa3g02059 416 CDD PIN_FEN1 4 332 - -
Vifa3g02059 416 SMART xpgineu 147 219 IPR006086 GO:0004518
Vifa3g02059 416 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Vifa3g02059 416 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Vifa3g02059 416 Gene3D - 219 286 - -
Vifa3g02059 416 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 368 IPR006084 -
Vifa3g02059 416 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Vifa3g02059 416 SMART 53exo3 29 301 IPR002421 GO:0003677
Vifa3g02059 416 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Vifa3g02059 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Vifa3g02059 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Vifa3g02059 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Vifa3g02059 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Vifa3g02059 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Vifa3g02059 416 SMART xpgn3 1 108 IPR006085 GO:0004518
Vifa3g02059 416 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Vifa3g02059 416 CDD H3TH_FEN1-Euk 222 289 - -
Vifa3g02059 416 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Vifa3g02059 416 FunFam Flap endonuclease 1 10 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02059 Vifa-Chr3 513011393 513015541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02059 1 412 Core DNA Replication Machinery Family AT5G26680 77.427 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02059 K04799 - cave:132187694 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02059 3 513011393 513015541 Vifa3g02059 3 513011393 513015541 ECH