Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02053 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTATGGTCTCCAGAAGAAGATGAGAAGCTTTTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCCGTCCCAAAACTTGCTGGTTTGCAGAGATGTGGCAAGAGTTGCAGGTTAAGATGGATAAACTACTTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAGCTTCATGCAGTTCTTGGAAACAGATGGTCTCAGATTGCAGCACAATTACCAGGAAGAACTGATAATGAGATTAAGAATCTATGGAATTCATGTCTCAAGAAAAGGTTGAGACAAAGTGGCATTGATCCAAACACTCATAAACCACTTTCTGAGATTGAAAATGATAATGAGAAACCACTCACAGCAAACAAAAGCAATCAAAAAGCTTCGGTTTCGTCGAATGAAGTTATGAGTTTGGTAATGGAACCTACAAAAGCTTCAATAGATGGTTACCCTCTAGAAGTTTCAACTTCCTCCAAGATCAACAACAATGGTAGCAGCAGCAGCAGCCATGAATTATTCCTAGACAGGTTCAACACCACAGGCTATTTTTCTTTTCAGAACATCAACTATGGATCAAACATCGGAATTTCCGAGAATCCAAATGCGTCTATTTGTTTCACACCAACCTCATCTTCATCACAAATGATGTCAGATACAAATTCTGTTATAAACTCCAACATGCTTCATTCTATTTCAACCTCAATTTTCCAAACACCAACACAAGTAAAACCAACCGTTTCCGTTTCCTCAGACGGAGTTCATAACTGGGAAGCAAGTAACTACAACACAAGCAAAACCGTTTCCAGCGCCAACTTTCTCGACACAGGAACTTTACCCTTACAAGAAGAAATGAAATGGTCTGAATATATCAACACACCATTTCTCATGCAGAATCAACCTCCTCAATCTATCTACACTGAGGCCAAACCAGAAACAGGTAATTACATTACTGATGAATCATGTACTACTTGGAACCAATGCCAACAACAACAACAACAACAACAACAACAACAACCAGGTTTTCAACTTTCTGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGGCAAACTATGTAG 1152 0.3924 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEIENDNEKPLTANKSNQKASVSSNEVMSLVMEPTKASIDGYPLEVSTSSKINNNGSSSSSHELFLDRFNTTGYFSFQNINYGSNIGISENPNASICFTPTSSSSQMMSDTNSVINSNMLHSISTSIFQTPTQVKPTVSVSSDGVHNWEASNYNTSKTVSSANFLDTGTLPLQEEMKWSEYINTPFLMQNQPPQSIYTEAKPETGNYITDESCTTWNQCQQQQQQQQQQQPGFQLSDIYSKDLQRFSVAFGQTM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02053 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vifa3g02053 383 FunFam MYB transcription factor 68 140 - -
Vifa3g02053 383 SMART sant 66 114 IPR001005 -
Vifa3g02053 383 SMART sant 13 63 IPR001005 -
Vifa3g02053 383 MobiDBLite consensus disorder prediction 119 154 - -
Vifa3g02053 383 Gene3D - 11 67 - -
Vifa3g02053 383 CDD SANT 17 61 IPR001005 -
Vifa3g02053 383 MobiDBLite consensus disorder prediction 139 154 - -
Vifa3g02053 383 FunFam Myb transcription factor 11 67 - -
Vifa3g02053 383 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa3g02053 383 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa3g02053 383 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vifa3g02053 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vifa3g02053 383 PANTHER MYB DOMAIN PROTEIN 55 1 332 - -
Vifa3g02053 383 CDD SANT 69 109 IPR001005 -
Vifa3g02053 383 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa3g02053 383 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa3g02053 383 Gene3D - 68 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02053 Vifa-Chr3 512119696 512121034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02053 1 383 MYB Transcription Factor Family AT1G09540 47.156 2.67e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g02053 Myb_DNA-binding 2.5e-15 CL0123