Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02048 ATGACTAGAAAGAAGGTGAAACTCGCATTCATTTCCGACGATTCCGCGAGAAAAGCAACGTACAAGAAAAGAAAGAAAGGTATCCTTAAGAAGGTGAGTGAACTCACAATTCTATGTGGAATTCCCGCTTGTGCTATAATTGCAAATCCTTTCGATTCTAAAACCGAAGTGTGGCCAGATCTAGACGAGGCCAAACAGGTTATCGAGAGGTATCAGAGTTCGTCTGTGATCGATGGGACGAAGAATGTGAATCAAGAGAGTTTCCTTTTGCAGCGAATTGCGAAAGCTAGGGAGCATCTTAAGAAGGTTAGGAATGAGAATCGTGAGAAGGAGATGAATATTCGGATGATGGAGTATATGGAAAAGAGAGATTTGCCGAATGACGTTAGTGTTTCGGATTTGAAGGAATTTGAGAAGTTGATTGAGAAAAATGTGAAGGAGATTGATAACAAGATTGTTGCACTTGGGGAATTAGATTAA 480 0.4042 MTRKKVKLAFISDDSARKATYKKRKKGILKKVSELTILCGIPACAIIANPFDSKTEVWPDLDEAKQVIERYQSSSVIDGTKNVNQESFLLQRIAKAREHLKKVRNENREKEMNIRMMEYMEKRDLPNDVSVSDLKEFEKLIEKNVKEIDNKIVALGELD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02048 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa3g02048 159 Coils Coil 93 113 - -
Vifa3g02048 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vifa3g02048 159 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vifa3g02048 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa3g02048 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa3g02048 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Vifa3g02048 159 PANTHER MADS BOX PROTEIN 3 152 - -
Vifa3g02048 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02048 Vifa-Chr3 510507727 510508206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02048 1 152 MADS-box Gene Family AT5G26630 45.752 2.94e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g02048 SRF-TF 5.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02048 - - gmx:100792290 219.55