Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02037 ATGGCGTCGGTTGGCGTGGCACCAACTTCGGGTTTTAGAGAAACCAGTGGTCATGGTGAAATTGGTGTTGATGTATTGCCAGAGGAAATGAATGATATGAAAATTAGGGATGATAGGGAAATGGAAGCTACCGTTGTTGACAGCGGCAATGGAACGGAGACTGGACATATCATTGTGACTACTATTGGTGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACAGGTGAAACCGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGATCACCCAAATGTTGTCTCTTTAAAGCATTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGTGTCATTAAGCATTACAACAAGTTGAACCAAAGGATGCCAATGGTTTATGTGAAGCTCTATACGTACCAGATCTTTAGAGCATTATCTTATATTCATCGCTGTATTGGAGTCTGCCATCGAGATATCAAACCTCAAAATCTATTGGTCAATCCACACACCCACCAGGTTAAATTATGCGACTTTGGAAGTGCAAAAGTCTTGGTTAAAGGCGAACCAAATATTTCGTATATATGTTCAAGATATTATAGAGCACCTGAGCTTATTTTTGGAGCAACTGAATATACTACAGCTATTGATGTCTGGTCTGTTGGTTGTGTTTTGGCTGAACTGCTGCTTGGACAGCCGTTGTTTCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATCAAGGTTCTTGGAACTCCGACTAGAGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCTCAAATCAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGATTATTACAATACTCCCCAAACCTACGGTGCCAAGCTTTAGATGCCTTAACCCATCCTTTCTTTGATGAGCTCCGTGAACCTAACGCTCGTTTGCCAACTGGTCGTTTCCTTCCACCACTATTTAACTTCAAACCTCACGAACTGAAAGGAGTCCCACTTGAGACCTTGGTGAAATTGGTTCCGGAGCATGCAAGGAAGCAATGCCCGTTTCTTGGCTTGTAA 1236 0.4183 MASVGVAPTSGFRETSGHGEIGVDVLPEEMNDMKIRDDREMEATVVDSGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPMVYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCQALDALTHPFFDELREPNARLPTGRFLPPLFNFKPHELKGVPLETLVKLVPEHARKQCPFLGL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02037 411 FunFam Glycogen synthase kinase-3 beta 59 154 - -
Vifa3g02037 411 CDD STKc_GSK3 70 362 IPR039192 -
Vifa3g02037 411 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g02037 411 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Vifa3g02037 411 Pfam Protein kinase domain 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02037 411 SMART serkin_6 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02037 411 SUPERFAMILY Protein kinase-like (PK-like) 74 385 IPR011009 -
Vifa3g02037 411 FunFam Shaggy-related protein kinase kappa 155 403 - -
Vifa3g02037 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vifa3g02037 411 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02037 411 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 405 - -
Vifa3g02037 411 Gene3D Phosphorylase Kinase; domain 1 59 154 - -
Vifa3g02037 411 Gene3D Transferase(Phosphotransferase) domain 1 155 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02037 Vifa-Chr3 506566034 506568675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02037 81 395 MAP Kinase Gene Family AT2G43790 34.557 1.02e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa3g02037 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02037 K00924 - gmx:100780226 808.52