Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02017 ATGAACTGCTTGTATATCTTTTTTAATCCTATGCAGCAAAACCACATGCAATTTACAGTTTTGCCTAAAGCTTCAACTGGACTTTGGCCCCATTCAAAACTGGAAGGAAACAATGCAAGGTTATGTAGTCAGCTTCAAAAGCTCTATGGAAAGCTTCTATACAAATTTGAGAAATATTACTTCTACAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCAAAGGACTGCCCTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCTACGGGACGAAGTGGTTATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCATTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCAGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 843 0.4021 MNCLYIFFNPMQQNHMQFTVLPKASTGLWPHSKLEGNNARLCSQLQKLYGKLLYKFEKYYFYRFPASQTATGSTKAKRKQGSTSSLSQLMDDGDYPTEAEISKDCPTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02017 280 CDD HMG-box_SF 136 191 - -
Vifa3g02017 280 SUPERFAMILY HMG-box 118 191 IPR036910 -
Vifa3g02017 280 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 132 200 IPR009071 -
Vifa3g02017 280 SMART hmgende2 133 202 IPR009071 -
Vifa3g02017 280 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 100 214 - -
Vifa3g02017 280 MobiDBLite consensus disorder prediction 72 93 - -
Vifa3g02017 280 Gene3D High mobility group box domain 118 198 IPR036910 -
Vifa3g02017 280 MobiDBLite consensus disorder prediction 72 91 - -
Vifa3g02017 280 Pfam HMG (high mobility group) box 136 193 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02017 Vifa-Chr3 501859439 501860635 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa3g02017 HMG_box 1.1e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02017 - - mtr:120577736 248.44