Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02016 ATGAACTGCTTGTATATCTTTTTTAATCCTATGCAGCAAAACCACATGCAATTTACAGTTTTGCCTAAAGCTTCAACTGGACTTTGGCCCCATTCAAAACTGGAAGGAAACAATGCAAGGTTATGTAGTCAGCTTCAAAAGCTCTATGGAAAGCTTCTATACAAATTTGAGAAATATTACTTCTACAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCAAAGGACTGCCCTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCTACGGGACGAAGTGGTTATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCATTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCAGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 849 0.4028 MNCLYIFFNPMQQNHMQFTVLPKASTGLWPHSKLEGNNARLCSQLQKLYGKLLYKFEKYYFYRFPASQTATGSTKGSAKRKQGSTSSLSQLMDDGDYPTEAEISKDCPTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02016 282 CDD HMG-box_SF 138 193 - -
Vifa3g02016 282 SUPERFAMILY HMG-box 120 193 IPR036910 -
Vifa3g02016 282 SMART hmgende2 135 204 IPR009071 -
Vifa3g02016 282 MobiDBLite consensus disorder prediction 69 95 - -
Vifa3g02016 282 Pfam HMG (high mobility group) box 138 195 IPR009071 -
Vifa3g02016 282 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 134 202 IPR009071 -
Vifa3g02016 282 MobiDBLite consensus disorder prediction 69 93 - -
Vifa3g02016 282 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 34 216 - -
Vifa3g02016 282 Gene3D High mobility group box domain 120 200 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02016 Vifa-Chr3 501859439 501860635 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa3g02016 HMG_box 1.1e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02016 - - mtr:120577736 250.366