Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02012 ATGAACTGCTTGTTTTGCCCTAAAGCTTCAACTGGACTTTGGCCCCATTCAAAACTGGAAGGAAACAATGCAAGGTTATGTAGTCAGCTTCAAAAGCTCTATGGAAAGCTTCTATACAAATTTGAGAAATATTACTTCTACAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCAAAGGACTTCCCTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCTACGGGACGAAGTGGTTATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCATTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCAGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 804 0.408 MNCLFCPKASTGLWPHSKLEGNNARLCSQLQKLYGKLLYKFEKYYFYRFPASQTATGSTKGSAKRKQGSTSSLSQLMDDGDYPTEAEISKDFPTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02012 267 MobiDBLite consensus disorder prediction 54 78 - -
Vifa3g02012 267 CDD HMG-box_SF 123 178 - -
Vifa3g02012 267 SMART hmgende2 120 189 IPR009071 -
Vifa3g02012 267 MobiDBLite consensus disorder prediction 54 80 - -
Vifa3g02012 267 Gene3D High mobility group box domain 105 185 IPR036910 -
Vifa3g02012 267 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 104 201 - -
Vifa3g02012 267 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 119 187 IPR009071 -
Vifa3g02012 267 Pfam HMG (high mobility group) box 123 180 IPR009071 -
Vifa3g02012 267 SUPERFAMILY HMG-box 105 178 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02012 Vifa-Chr3 501840328 501841530 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa3g02012 HMG_box 1e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02012 - - mtr:120577736 252.292