Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02011 ATGGAAGAAGAAAAGGAAGAGGTGAAGGCAATGGTCTCATCACAACCAGAACCAGATACCCAACTCACCAATGTTGATGTGAAACAGTACTCTTCGCCTGATGACTTAGAGACCTTCTACGTCAAACTCACTGACTTGTTGGACTCCTCTGGATACACTCTCATTTTGAATGTGAGAAAAACATGCATAGATTTGTACCAGTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCAAAGGACTGCCCTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCTACGGGACGAAGTGGTTATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCATTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCAGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 960 0.4156 MEEEKEEVKAMVSSQPEPDTQLTNVDVKQYSSPDDLETFYVKLTDLLDSSGYTLILNVRKTCIDLYQFYLEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARFPASQTATGSTKAKRKQGSTSSLSQLMDDGDYPTEAEISKDCPTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02011 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 101 - -
Vifa3g02011 319 Pfam ARID/BRIGHT DNA binding domain 37 101 IPR001606 GO:0003677
Vifa3g02011 319 SMART bright_3 34 210 IPR001606 GO:0003677
Vifa3g02011 319 ProSiteProfiles ARID domain profile. 33 141 IPR001606 GO:0003677
Vifa3g02011 319 SUPERFAMILY ARID-like 30 97 IPR036431 GO:0003677
Vifa3g02011 319 CDD HMG-box_SF 175 230 - -
Vifa3g02011 319 SUPERFAMILY HMG-box 157 230 IPR036910 -
Vifa3g02011 319 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02011 319 SMART hmgende2 172 241 IPR009071 -
Vifa3g02011 319 MobiDBLite consensus disorder prediction 102 130 - -
Vifa3g02011 319 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 171 239 IPR009071 -
Vifa3g02011 319 Gene3D - 17 117 IPR036431 GO:0003677
Vifa3g02011 319 Gene3D High mobility group box domain 157 237 IPR036910 -
Vifa3g02011 319 Pfam HMG (high mobility group) box 175 232 IPR009071 -
Vifa3g02011 319 MobiDBLite consensus disorder prediction 102 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02011 Vifa-Chr3 501829518 501831108 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa3g02011 ARID 3.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02011 - - mtr:120577736 318.546