Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02010 ATGGAAGAAGAAAAGGAAGAGGTGAAGGCAATGGTCTCATCACAACCAGAACCAGATACCCAACTCACCAATGTTGATGTGAAACAGTACTCTTCGCCTGATGACTTAGAGACCTTCTACGTCAAACTCACTGACTTGTTGGACTCCTCTGGATACACTCTCATTTTGAATGTGAGAAAAACATGCATAGATTTGTACCAGTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCAAAGGACTGCCCTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCTACGGGACGAAGTGGTTATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCATTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCAGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 966 0.4161 MEEEKEEVKAMVSSQPEPDTQLTNVDVKQYSSPDDLETFYVKLTDLLDSSGYTLILNVRKTCIDLYQFYLEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARFPASQTATGSTKGSAKRKQGSTSSLSQLMDDGDYPTEAEISKDCPTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02010 321 Pfam ARID/BRIGHT DNA binding domain 37 100 IPR001606 GO:0003677
Vifa3g02010 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Vifa3g02010 321 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02010 321 SMART bright_3 34 212 IPR001606 GO:0003677
Vifa3g02010 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 101 - -
Vifa3g02010 321 MobiDBLite consensus disorder prediction 102 134 - -
Vifa3g02010 321 Gene3D - 17 114 IPR036431 GO:0003677
Vifa3g02010 321 SUPERFAMILY ARID-like 30 97 IPR036431 GO:0003677
Vifa3g02010 321 CDD HMG-box_SF 177 232 - -
Vifa3g02010 321 Pfam HMG (high mobility group) box 177 234 IPR009071 -
Vifa3g02010 321 SUPERFAMILY HMG-box 159 232 IPR036910 -
Vifa3g02010 321 ProSiteProfiles ARID domain profile. 33 129 IPR001606 GO:0003677
Vifa3g02010 321 SMART hmgende2 174 243 IPR009071 -
Vifa3g02010 321 Gene3D High mobility group box domain 159 239 IPR036910 -
Vifa3g02010 321 MobiDBLite consensus disorder prediction 102 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02010 Vifa-Chr3 501829518 501831108 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa3g02010 HMG_box 1.4e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02010 - - mtr:120577736 320.472