Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02009 ATGGAAGAAAACAACCAAGAGGCGGTGAAGACGATGGTTTCATCACAACAACCAGATACGCAACTCACCAATGTTGTTGTGAAACAGTACTCTCCTCCGGATGACTTAGAAACCTTCTACGTCAAACTCACTGACTTGTTGGACTCTTCTGGTTTCACTCTCATTTTGAATGTCCGGGAAACATGCTTAGACTTGTACCAGTTTTACTTGGAAGTCACCAAAAGAGGAGGTTATCACCAGGTTGGTAAAGAAAAGAAATGGGGTGAAATAGTGTCTGATCTAAAACTGGAAGGAAACAATGCAAAGTTACCTGCTTCTCAAACTCCAACTCCCACCACCAAAGGTTCAGCTAAAAGGAAGCAGAGCTCAACCACTAGTTTATCTCAATTTGTGGATGATGAAGATTATCAGACAGCGGCAATGATATCCAACGACTACCCTATCAAAATGACAGCAATACCTGAAGTGCAACTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTGTTCCAATAGGACGAAGTGGATATCAAATTTTCCTCATGCAGGAATGTGCACGATTAAAAGCTTCTCGTCACGATATAGATGGCAAAACAGTCATGCGCATGGCTGTCGATGGATGGAATAACTTGTCAGACATTGATAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAAGGAACAAAAGAAGGAAGCAATGATCACTGAAAATAATAAACAGAAGAGCACTCAAGATCTTAAGAAGGATGAAAAGAAGCCTAATCTGTGCTGTGGTGACTACTACTCTGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGCAGTGGATTTGGCTTCTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATTGTTCGGTAGATTTGCTAACTGGGACAGCAACCGGAGAACCCAAATAA 966 0.4089 MEENNQEAVKTMVSSQQPDTQLTNVVVKQYSPPDDLETFYVKLTDLLDSSGFTLILNVRETCLDLYQFYLEVTKRGGYHQVGKEKKWGEIVSDLKLEGNNAKLPASQTPTPTTKGSAKRKQSSTTSLSQFVDDEDYQTAAMISNDYPIKMTAIPEVQLQTPSKDKEKKKKRGVPIGRSGYQIFLMQECARLKASRHDIDGKTVMRMAVDGWNNLSDIDKQPYLEESKKIKEQKKEAMITENNKQKSTQDLKKDEKKPNLCCGDYYSVTLQPQANNPLVNNAAVDLASKMTEKTSKDPFFPFDLDAYCSVDLLTGTATGEPK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02009 321 Gene3D - 15 135 IPR036431 GO:0003677
Vifa3g02009 321 MobiDBLite consensus disorder prediction 233 254 - -
Vifa3g02009 321 MobiDBLite consensus disorder prediction 101 129 - -
Vifa3g02009 321 SUPERFAMILY ARID-like 28 97 IPR036431 GO:0003677
Vifa3g02009 321 Gene3D High mobility group box domain 157 239 IPR036910 -
Vifa3g02009 321 MobiDBLite consensus disorder prediction 100 129 - -
Vifa3g02009 321 Pfam HMG-box domain 177 238 IPR009071 -
Vifa3g02009 321 SMART hmgende2 172 242 IPR009071 -
Vifa3g02009 321 Pfam ARID/BRIGHT DNA binding domain 37 100 IPR001606 GO:0003677
Vifa3g02009 321 ProSiteProfiles ARID domain profile. 33 135 IPR001606 GO:0003677
Vifa3g02009 321 CDD HMG-box_SF 177 232 - -
Vifa3g02009 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 18 102 - -
Vifa3g02009 321 SUPERFAMILY HMG-box 159 237 IPR036910 -
Vifa3g02009 321 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02009 Vifa-Chr3 501814630 501816289 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa3g02009 HMG_box_2 3.9e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02009 - - mtr:120577736 324.709