Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02008 ATGGAAGAAAACAACCAAGAGGCGGTGAAGACGATGGTTTCATCACAACAACCAGATACGCAACTCACCAATGTTGTTGTGAAACAGTACTCTCCTCCGGATGACTTAGAAACCTTCTACGTCAAACTCACTGACTTGTTGGACTCTTCTGGTTTCACTCTCATTTTGAATGTCCGGGAAACATGCTTAGACTTGTACCAGTTTTACTTGGAAGTCACCAAAAGAGGAGGTTATCACCAGGTTGGTAAAGAAAAGAAATGGGGTGAAATAGTGTCTGATCTAAAACTGGAAGGAAACAATGCAAAGTTACCTGCTTCTCAAACTCCAACTCCCACCACCAAAGCTAAAAGGAAGCAGAGCTCAACCACTAGTTTATCTCAATTTGTGGATGATGAAGATTATCAGACAGCGGCAATGATATCCAACGACTACCCTATCAAAATGACAGCAATACCTGAAGTGCAACTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTGTTCCAATAGGACGAAGTGGATATCAAATTTTCCTCATGCAGGAATGTGCACGATTAAAAGCTTCTCGTCACGATATAGATGGCAAAACAGTCATGCGCATGGCTGTCGATGGATGGAATAACTTGTCAGACATTGATAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAAGGAACAAAAGAAGGAAGCAATGATCACTGAAAATAATAAACAGAAGAGCACTCAAGATCTTAAGAAGGATGAAAAGAAGCCTAATCTGTGCTGTGGTGACTACTACTCTGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGCAGTGGATTTGGCTTCTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATTGTTCGGTAGATTTGCTAACTGGGACAGCAACCGGAGAACCCAAATAA 960 0.4083 MEENNQEAVKTMVSSQQPDTQLTNVVVKQYSPPDDLETFYVKLTDLLDSSGFTLILNVRETCLDLYQFYLEVTKRGGYHQVGKEKKWGEIVSDLKLEGNNAKLPASQTPTPTTKAKRKQSSTTSLSQFVDDEDYQTAAMISNDYPIKMTAIPEVQLQTPSKDKEKKKKRGVPIGRSGYQIFLMQECARLKASRHDIDGKTVMRMAVDGWNNLSDIDKQPYLEESKKIKEQKKEAMITENNKQKSTQDLKKDEKKPNLCCGDYYSVTLQPQANNPLVNNAAVDLASKMTEKTSKDPFFPFDLDAYCSVDLLTGTATGEPK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02008 319 ProSiteProfiles ARID domain profile. 33 133 IPR001606 GO:0003677
Vifa3g02008 319 Gene3D High mobility group box domain 154 237 IPR036910 -
Vifa3g02008 319 Pfam ARID/BRIGHT DNA binding domain 37 100 IPR001606 GO:0003677
Vifa3g02008 319 Gene3D - 15 132 IPR036431 GO:0003677
Vifa3g02008 319 CDD HMG-box_SF 175 230 - -
Vifa3g02008 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 18 102 - -
Vifa3g02008 319 SUPERFAMILY ARID-like 28 97 IPR036431 GO:0003677
Vifa3g02008 319 Coils Coil 227 247 - -
Vifa3g02008 319 Pfam HMG-box domain 175 236 IPR009071 -
Vifa3g02008 319 SMART hmgende2 170 240 IPR009071 -
Vifa3g02008 319 MobiDBLite consensus disorder prediction 101 126 - -
Vifa3g02008 319 MobiDBLite consensus disorder prediction 100 126 - -
Vifa3g02008 319 MobiDBLite consensus disorder prediction 231 252 - -
Vifa3g02008 319 SUPERFAMILY HMG-box 157 235 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02008 Vifa-Chr3 501814630 501816289 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa3g02008 HMG_box_2 3.8e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02008 - - mtr:120577736 317.39