Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02003 ATGGATTTCCAGGGTTTCTTAAACGACTTGCAGGATTGGGAACTTTCTACAAAGGATAATAAAGCGGCAAAAACCAACTCACAAAAGGAAAATGTTGGTTCATCTTCTCGGAGTGGTGGATCAGTGGGTGTCGAGAATGGATCAAGAGGAGATACTATTTCTTTTGATCATGCAAGAAATTCTTCAGCTCAGTATGATTTTTCAAGAAACAATGATCTCTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCCGAGAAAGACTTGGGTAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTGTTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCGCATGCGAACAGGGCAATGGCTCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGCTATATAAAAGCATACTCACGGAGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAATCACTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAGAAACACTGTGCAAAAAATGGGAAAGTCCGAGGCAAAAGTTAATGGAAGCAGCAGCATCAACTCTGTTTCACATGGTACTCAAAAGTCAGGTCCAGCTGAAGCTCATCATCAAACCAAGGGTAATGAGCGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAATACTAAGGATACAAAATCTGGAAGCAGGACTCGAGGACAAGTGGACAATGGTTCTAAGGAAGGTCATGGTGCAACCAACAGCTTGGAGCAGAGAAATCACAAAACTAGAAAGCCAAAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAATAATATAACGCCGCCAACTACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCACGAGTTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTATTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCATGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAACAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGACGGAGTATGCAGAGATTCTGGATAACCTCCGACCAAAGTTCTACCTTGAGTAG 1386 0.4156 MDFQGFLNDLQDWELSTKDNKAAKTNSQKENVGSSSRSGGSVGVENGSRGDTISFDHARNSSAQYDFSRNNDLLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAVDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKTSKALRNTVQKMGKSEAKVNGSSSINSVSHGTQKSGPAEAHHQTKGNERKIPAKESLLMEEINTKDTKSGSRTRGQVDNGSKEGHGATNSLEQRNHKTRKPKIKASVEQLASRAASLAMAEAANNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPHELPKIFKNALSSTLLIEIIKCAASFFAEDMDLVVSYMNNLTMVPRFDVIVMCLPSTDKDDLRKIWNEVFCGEATPTEYAEILDNLRPKFYLE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02003 461 MobiDBLite consensus disorder prediction 220 250 - -
Vifa3g02003 461 SMART tpr_5 89 122 IPR019734 GO:0005515
Vifa3g02003 461 SMART tpr_5 123 155 IPR019734 GO:0005515
Vifa3g02003 461 SMART tpr_5 156 189 IPR019734 GO:0005515
Vifa3g02003 461 MobiDBLite consensus disorder prediction 18 57 - -
Vifa3g02003 461 PANTHER OS05G0129900 PROTEIN 1 460 - -
Vifa3g02003 461 MobiDBLite consensus disorder prediction 26 57 - -
Vifa3g02003 461 MobiDBLite consensus disorder prediction 283 298 - -
Vifa3g02003 461 Gene3D Tetratricopeptide repeat domain 77 187 IPR011990 GO:0005515
Vifa3g02003 461 ProSiteProfiles TPR repeat profile. 89 122 IPR019734 GO:0005515
Vifa3g02003 461 MobiDBLite consensus disorder prediction 220 312 - -
Vifa3g02003 461 Pfam Tetratricopeptide repeat 124 152 IPR019734 GO:0005515
Vifa3g02003 461 Pfam Potential Monad-binding region of RPAP3 338 427 IPR025986 -
Vifa3g02003 461 MobiDBLite consensus disorder prediction 251 282 - -
Vifa3g02003 461 SUPERFAMILY TPR-like 85 201 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02003 Vifa-Chr3 500760093 500765775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02003 93 159 U-box Gene Family AT3G07370 38.235 5.26e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02003 K23002 - gmx:100784528 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02003 3 500760093 500765775 Vifa3g02003 3 500760093 500765775 ECH