Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02002 ATGGATTTCCAGGGTTTCTTAAACGACTTGCAGGATTGGGAACTTTCTACAAAGGATAATAAAGCGGCAAAAACCAACTCACAAAAGGAAAATAAATTCACAAAAGGTTCATCTTCTCGGAGTGGTGGATCAGTGGGTGTCGAGAATGGATCAAGAGGAGATACTATTTCTTTTGATCATGCAAGAAATTCTTCAGCTCAGTATGATTTTTCAAGAAACAATGATCTCTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCCGAGAAAGACTTGGGTAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTGTTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCGCATGCGAACAGGGCAATGGCTCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGCTATATAAAAGCATACTCACGGAGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAATCACTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAGAAACACTGTGCAAAAAATGGGAAAGTCCGAGGCAAAAGTTAATGGAAGCAGCAGCATCAACTCTGTTTCACATGGTACTCAAAAGTCAGGTCCAGCTGAAGCTCATCATCAAACCAAGGGTAATGAGCGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAATACTAAGGATACAAAATCTGGAAGCAGGACTCGAGGACAAGTGGACAATGGTTCTAAGGAAGGTCATGGTGCAACCAACAGCTTGGAGCAGAGAAATCACAAAACTAGAAAGCCAAAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAATAATATAACGCCGCCAACTACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCACGAGTTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTATTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCATGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAACAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGACGGAGTATGCAGAGATTCTGGATAACCTCCGACCAAAGTTCTACCTTGAGTAG 1395 0.4136 MDFQGFLNDLQDWELSTKDNKAAKTNSQKENKFTKGSSSRSGGSVGVENGSRGDTISFDHARNSSAQYDFSRNNDLLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAVDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKTSKALRNTVQKMGKSEAKVNGSSSINSVSHGTQKSGPAEAHHQTKGNERKIPAKESLLMEEINTKDTKSGSRTRGQVDNGSKEGHGATNSLEQRNHKTRKPKIKASVEQLASRAASLAMAEAANNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPHELPKIFKNALSSTLLIEIIKCAASFFAEDMDLVVSYMNNLTMVPRFDVIVMCLPSTDKDDLRKIWNEVFCGEATPTEYAEILDNLRPKFYLE 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02002 464 MobiDBLite consensus disorder prediction 254 285 - -
Vifa3g02002 464 MobiDBLite consensus disorder prediction 223 316 - -
Vifa3g02002 464 Pfam Tetratricopeptide repeat 127 155 IPR019734 GO:0005515
Vifa3g02002 464 PANTHER OS05G0129900 PROTEIN 1 463 - -
Vifa3g02002 464 Gene3D Tetratricopeptide repeat domain 80 190 IPR011990 GO:0005515
Vifa3g02002 464 Pfam Potential Monad-binding region of RPAP3 341 430 IPR025986 -
Vifa3g02002 464 SUPERFAMILY TPR-like 88 204 IPR011990 GO:0005515
Vifa3g02002 464 MobiDBLite consensus disorder prediction 223 253 - -
Vifa3g02002 464 MobiDBLite consensus disorder prediction 19 58 - -
Vifa3g02002 464 SMART tpr_5 159 192 IPR019734 GO:0005515
Vifa3g02002 464 SMART tpr_5 126 158 IPR019734 GO:0005515
Vifa3g02002 464 SMART tpr_5 92 125 IPR019734 GO:0005515
Vifa3g02002 464 MobiDBLite consensus disorder prediction 286 301 - -
Vifa3g02002 464 MobiDBLite consensus disorder prediction 302 316 - -
Vifa3g02002 464 MobiDBLite consensus disorder prediction 29 58 - -
Vifa3g02002 464 ProSiteProfiles TPR repeat profile. 92 125 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02002 Vifa-Chr3 500760093 500765775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02002 96 162 U-box Gene Family AT3G07370 38.235 5.61e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02002 K23002 - gmx:100784528 642.114