Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01999 ATGGAAGATATTTATAATATCAACAAGATGAATCTCCCTTTTGTATCTTGTTTGGAAAACGTTAACGTTTCTTCTTATACTCCTGCTACTACTACTACTTCGGAATTGCATCTAGGACTCGTTCGTGCTGTTACTAATAATAACTGCCAACATCAACCGGATCTAATCGGGTCGGATATATCGGATCGGATTATCAAGAACCAGATCGCCACTCATCCTCTTTATCCAAATCTACTATCTGCTTTCATAGAATGCCAAAAGGTTGGAGCACCGACGGAAGTTGTGTCTCTTCTCGAAGAAATAGGCCGTGAAAGCCACCACACCAATGTTCTACGTCAGATAGGAGATGATCCTGACCTTGATCAATTCATGGAATCATACTGTGAAGTTCTTCATAGATACAAAGAGGAGTTGTGGAAACACATGAATGAAGCGAGTTTATTTTTGTGTGATATTGAATCACAATTGAGCCAACTTTGCAAAGGCACATTAAAAATCTCATCTGATTATAACAACAACCGTTCAGATGAAGCTGCAGGGACATCAGAGGATGAAATGAGCTGTGAAAAAGTTGAAGGTGTTCATGAAGTTTGTGTTTCATCATGTCCAAGTGACAAAGAGCTTAAACAAATGCTCCTTCGTAAATATGGAGGTTATCTTAGTAACTTGAGAAAGGAATTTCTTAAGAAAAGGAAAAAGGGTAAATTACCAAAAGATGCAAGAATAGCATTGCTGGATTGGTGGAATGTTCACTATAGATGGCCTTATCCCACGGAGGAGGAGAAAATGCAGCTATCGGAAATGACTGGACTTGATATAAAGCAGATTAATAACTGGTTCATCAATCAGAGGAAAAGACACTGGAAACCATCTGAAGATATGAGATTTGCTGTTATGGAGGGTGTGAGTAGCATCGGCATAGCAGAACCTCTATAA 936 0.39 MEDIYNINKMNLPFVSCLENVNVSSYTPATTTTSELHLGLVRAVTNNNCQHQPDLIGSDISDRIIKNQIATHPLYPNLLSAFIECQKVGAPTEVVSLLEEIGRESHHTNVLRQIGDDPDLDQFMESYCEVLHRYKEELWKHMNEASLFLCDIESQLSQLCKGTLKISSDYNNNRSDEAAGTSEDEMSCEKVEGVHEVCVSSCPSDKELKQMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARIALLDWWNVHYRWPYPTEEEKMQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAVMEGVSSIGIAEPL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01999 311 ProSiteProfiles 'Homeobox' domain profile. 227 290 IPR001356 GO:0003677
Vifa3g01999 311 SMART ELK_2 207 228 IPR005539 GO:0003677
Vifa3g01999 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 297 - -
Vifa3g01999 311 Pfam Homeobox KN domain 247 286 IPR008422 GO:0003677|GO:0006355
Vifa3g01999 311 SUPERFAMILY Homeodomain-like 229 299 IPR009057 -
Vifa3g01999 311 ProSitePatterns 'Homeobox' domain signature. 265 288 IPR017970 GO:0000981|GO:0006355
Vifa3g01999 311 Pfam KNOX1 domain 65 106 IPR005540 GO:0003677|GO:0005634
Vifa3g01999 311 Pfam ELK domain 207 228 IPR005539 GO:0003677
Vifa3g01999 311 ProSiteProfiles ELK domain profile. 207 227 IPR005539 GO:0003677
Vifa3g01999 311 Pfam KNOX2 domain 113 160 IPR005541 GO:0003677|GO:0005634
Vifa3g01999 311 SMART HOX_1 229 294 IPR001356 GO:0003677
Vifa3g01999 311 SMART KNOX2_2 110 161 IPR005541 GO:0003677|GO:0005634
Vifa3g01999 311 Gene3D - 225 299 - -
Vifa3g01999 311 CDD homeodomain 243 291 IPR001356 GO:0003677
Vifa3g01999 311 SMART KNOX1_2 63 107 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01999 Vifa-Chr3 500556878 500561165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01999 33 309 Homeobox Transcription Factor Family AT1G23380 47.959 1.00e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa3g01999 KNOX2 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01999 - - mtr:11406488 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01999 3 500556878 500561165 Vifa3g01999 3 500556878 500561165 ECH