Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01980 ATGTCCATTGTGTATAATGAACTGAACTGGATATGGTTAATTTTGTATATATGCATGGCTTCAAAAACCAACAAGGTATCTATTGTTAAACCTTGGACTACTGGAATAAGTGGACAGCTTCAAAAAGCACTTGTGACAGGTGTGCCAAAGCTAAAGAGAATAGATCTTGAAGTAGCATGTGAAGATTTTAGTAATGTAATCGGTAAATCACCGATTGGTACGTTGTACAAAGGAACTTTATCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTCTGACATTATCCAAGACTTGGACAAAGAATTTAGAAGCTCAGTTTAAGAACAAGATAGACACACTATCAAAAGTGAACCATAGGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAAGAACCTTTTACCAGAATGTTGGTTTTTGAATATGCGCCAAATGGAACACTATTCGAGCATTTACACGTGAAAGAAGCTGAGCACTTGAACTGGGGACCGAGACTTAGAATTGCGACAGGAATGGCTTACTGCCTACAATACATGCATGGATTAGACCCTCCTGTGGCCCTTACCAATCTGAGTTCTTCAACTGTCCATCTAACAGATGATCATGCAGCAAAAATCTCGGATTTGAGTTTCTCCCGCGAAACAGATTCATCTGAAAAGAAACCTGATGGTAGAAAAGACATTGATATTGATATGACGCAATCAACAATTCCAGCGAGTAATGTTTATAGCTTTGGTGTTTTGTTATTCGAGATAGTAACCGGTCGGATTCCTTATTCGCTGGATAATAGCTCAGCTGAAAACTGGGCAGCACATTATCTAAAATGGGACAAACCTATGAAGGAAATGGTGGATGCAACTCTAGCATCTTACCAAGAGAATCAGGTGGAACAAGTTGCGGAGTTGATAAAAGATTGTGTGGATCCTGATTCGGAGAAGAGACCGAGAATGAATGAAGTGAGTGAGAGATTGAGAGAAATAACGAAAATGTCGTCTGAGTTTGTAGTTCCTAAACTTTCTCCACTTTGGTGGGCTGAGCTTGAGATTTCTTCTGCATAA 1062 0.3898 MSIVYNELNWIWLILYICMASKTNKVSIVKPWTTGISGQLQKALVTGVPKLKRIDLEVACEDFSNVIGKSPIGTLYKGTLSSGVEIAVASVSLTLSKTWTKNLEAQFKNKIDTLSKVNHRNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEAEHLNWGPRLRIATGMAYCLQYMHGLDPPVALTNLSSSTVHLTDDHAAKISDLSFSRETDSSEKKPDGRKDIDIDMTQSTIPASNVYSFGVLLFEIVTGRIPYSLDNSSAENWAAHYLKWDKPMKEMVDATLASYQENQVEQVAELIKDCVDPDSEKRPRMNEVSERLREITKMSSEFVVPKLSPLWWAELEISSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01980 353 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Vifa3g01980 353 MobiDBLite consensus disorder prediction 210 229 - -
Vifa3g01980 353 SUPERFAMILY Protein kinase-like (PK-like) 45 325 IPR011009 -
Vifa3g01980 353 Pfam Protein tyrosine and serine/threonine kinase 64 325 IPR001245 GO:0004672|GO:0006468
Vifa3g01980 353 FunFam Inactive receptor-like serine/threonine-protein kinase 35 143 - -
Vifa3g01980 353 PANTHER PROTEIN MALE DISCOVERER 2 11 352 - -
Vifa3g01980 353 ProSiteProfiles Protein kinase domain profile. 61 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01980 353 Gene3D Transferase(Phosphotransferase) domain 1 144 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01980 Vifa-Chr3 497668086 497669329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01980 56 321 Receptor kinase-like Gene Family AT1G67720 35.000 1.72e-41 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa3g01980 PK_Tyr_Ser-Thr 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01980 - - gmx:100807163 484.567