Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01978 ATGCCAATCTCACAGATAAAGATAGATGGAAATGTAGAAAGTCCTAGTAGTATTGCATGTAGTGATTTTACCTTTGCCTTATCAATTAGTAGTGATGATTCTGAAGAATGTGAGACTAGTAATAACTCCCCAGGGCTAGTTGCTAGACTCATGGGTTTGGATTCATTGCCTCCTGTTTCAATGAATGATTATTGCCATGTAGATTCCATAAACATGCCACTTATGTCAAAAAACTCTTCTTGGGATAACATTGAAGAAGAATCAACCATGAATAGATTTCAAAATGAACTTTTGTCTCCTATCAAAAGCCATGGCTATGTGAAATCTAAGAATGCTGCATATATAATGGATGAGGAAAGTCCTCAACCATATATGAGAAACAAAATGTCTTCCTTGAGAACTCTTGAACTGCAAGAGAAGTCGGAAGGGGCGCAGCGCGAATCCAGGTTCAATGTGAATGGAAAAGATACCGAGAAGAGAAGAAATTCGGGAAATAGTACTTCACCGCATGGTAAAGGAAAATCTGTTTCACTAGCAACACCTTCCAAAACCGATGTTCTAAGTAAGGATACATTGAATTTGAATGGAAATAGGAGATGCATGAAGCAGAAAGAGATAAAATCGAACCAAAAGAATTGTATTGGTCAAAACAGTGATATTCTTAGGCAGAATGGTTTAACCAGCAAAGGTATATCAGCTACAAAAGTACTTAACAATAAGCCAACACGAATCTGTTCTTCAGAAAATTTGACCGGAGCTAGGAAGACAACAAACAAATGTGATGTTAATTCCATTATTGAATCCAAAAGGTCAAGCACAAGAGTAGCTGATAAGCGAAAGGAAGTTTCAGTATGCAATAGAAAGAGTTCTTCTTCCCAAAAGAAGAGGTGTGATCAGAATGGTGCACGAGGTTCTGATAATGCAGTTAATACTTTTGAAAGCAAGTCCATAAAATGTAATGTTACAACTGATGAAAGTATTTACAATGGTTCATTTAGCATGAAAGAAAGCAGGGATGTCATTTCGTTCACATTTACTTCTCCATTGAGGAGAAAAAGGCTTGAGTCGCGATCCACTACCGAGCAGGCAATGGAAACAAGGGCCGGAATTGATGTTGATTCTTTTGATCACAGTGGTAAGGTTTATCCCGAAGAGTCATCATTATCTCCTTCCAGGTTTCATGTATTAGATGTTGATGCATTAAGTGTCATGTTATCTCACATCAACCCACCTCAATGCACCTTGGAAGTAGAAGATTGTTCGTTTGGTTTTGGATCTACTTTGGAGGACAGATTTAACAGCATGATATCAGAACCAATAGAAGACAGAACAGTTTATTCTTCCATGCAAGATGAAGAAGTATCTAGCTCTCAAATAAATGAATCTATTACACCAGAGTACAAGGTGAATTGGTTTGAGCAAAGCTCTACAAGATCAGAAAGGATGATGGAACTTGAATATGTAAAGGATATACTCAGTAGTGCAGAATTGATGGCAGGAGAATTAGCGGTGGACGAAACCGAAAATATGATAACGCCAACTCTCTTCGAAATGTTGGAGATTCAGAGAACTGAGGTAGAAAGCTATGAAGAGTACTCTAAGACTCAAAGGAAGGCTATATTTGACTGTGTAAGTGAGTGTTTAGGATTAAAATGTAGGCAAGTTTTTGTTGCAAGGTGCAAAACATGGCCTAGATGGATAACATTTATGAGGAAGAGGTGGTTAGCAGAAGAAGTGTACAAGGAAATGTTGGAATTTAGAAGCATGGAAGAAGAGGTAGTTGTGGATGAGATTATCAGAAAGGACATGTGCACTCCATTGGGTAGATGGCTTGACTTTGACATAGAAGCCTTTGAAAATGGCTTAGAAATTGAGCTTGACATAGTAACCTTTTTGATAGATGAATTGGTATCTGATTTGTGGCTAGTTTAA 1932 0.3778 MPISQIKIDGNVESPSSIACSDFTFALSISSDDSEECETSNNSPGLVARLMGLDSLPPVSMNDYCHVDSINMPLMSKNSSWDNIEEESTMNRFQNELLSPIKSHGYVKSKNAAYIMDEESPQPYMRNKMSSLRTLELQEKSEGAQRESRFNVNGKDTEKRRNSGNSTSPHGKGKSVSLATPSKTDVLSKDTLNLNGNRRCMKQKEIKSNQKNCIGQNSDILRQNGLTSKGISATKVLNNKPTRICSSENLTGARKTTNKCDVNSIIESKRSSTRVADKRKEVSVCNRKSSSSQKKRCDQNGARGSDNAVNTFESKSIKCNVTTDESIYNGSFSMKESRDVISFTFTSPLRRKRLESRSTTEQAMETRAGIDVDSFDHSGKVYPEESSLSPSRFHVLDVDALSVMLSHINPPQCTLEVEDCSFGFGSTLEDRFNSMISEPIEDRTVYSSMQDEEVSSSQINESITPEYKVNWFEQSSTRSERMMELEYVKDILSSAELMAGELAVDETENMITPTLFEMLEIQRTEVESYEEYSKTQRKAIFDCVSECLGLKCRQVFVARCKTWPRWITFMRKRWLAEEVYKEMLEFRSMEEEVVVDEIIRKDMCTPLGRWLDFDIEAFENGLEIELDIVTFLIDELVSDLWLV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01978 643 MobiDBLite consensus disorder prediction 137 165 - -
Vifa3g01978 643 Pfam DUF761-associated sequence motif 39 59 IPR032795 -
Vifa3g01978 643 MobiDBLite consensus disorder prediction 286 306 - -
Vifa3g01978 643 MobiDBLite consensus disorder prediction 166 190 - -
Vifa3g01978 643 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 30 639 - -
Vifa3g01978 643 MobiDBLite consensus disorder prediction 271 306 - -
Vifa3g01978 643 Pfam Domain of unknown function (DUF4378) 484 635 IPR025486 -
Vifa3g01978 643 MobiDBLite consensus disorder prediction 137 190 - -
Vifa3g01978 643 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01978 Vifa-Chr3 497385572 497387692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01978 3 640 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 27.396 2.74e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01978 - - psat:127096861 890.952