Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01975 ATGTCGTATCGTCCAACTGCAAACTCCAGGACCGAGGTCCGTCGCAATCGATACAAAGTCGCCGTCGATGCCGAAGAAGGCCGCCGACGCCGTGAGGACACCATGGTTGAGATCCGTAAGAATCGTAGAGAAGAGAGTTTGCTCAAAAAGAGACGCGAGGGTCTTCAACCTCAGCAGATTCCTTCCTCCACTCACTCCGTTGTAGAGAAGAAGTTGGAAAATTTACCATCCATGGTTGCTGGTGTTTGGAGTGATGATAATAATTTGCAGCTTGAGTCAACAACTCAGTTTCGAAAGCTGCTTTCTATTGAGCGTACTCCACCGATTGAGGAGGTTATACAGACTGGTGTTGTTTCTCGTTTTGTTGAGTTTCTGATGAGGGAAGATTTTCCACAGTTGCAGTTTGAGGCAGCCTGGGCTTTGACCAATATAGCTTCTGGAACGTCTGAAAACACCAAAGTGGTAATTGACCACGGCGCTGTTCCAATTTTTGTGAAGCTTCTTGCTTCTTCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCTTTAGGAAATGTTGCTGGGGATTCTCCTAGATGTCGTGATCTTGTTCTTGGCCAGGGTGCTTTGGTTCCTCTTTTGGCTCAATTGAATGAACATGCCAAGCTTTCTATGCTGAGAAATGCTACTTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCCCCTTTTGATCAGGTCAAACCGGCACTTCCTGCTCTTGCCGGTCTTATTCATTCAAATGACGAAGAAGTCTTGACTGATGCCTGCTGGGCACTTTCATATCTCTCTGACGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTGGAGCTTCTACTGCACCCATCTCCTTCGGTGCTGATTCCTGCTCTCCGCACTGTTGGAAACATAGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAATCATCAGTCTCTTCCTTGCTTATTTAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATTACAGCTGGGAATAAACAACAGATTCAGGCTGTGATTGAGGCCAACATATTTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTTGATATTAAGAAAGAGGCTGCATGGGCTATCTCAAATGCTACATCTGGTGGATCTCACGATCAAATCAAGTATCTAGTAGAGCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCTAGGATCGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAAAATATAGGCAACACCGGCGACGTGAATCTATATGCCCAATTGATTGATGATGCTGAGGGGTTGGAGAAAATTGAAAACCTCCAGAGTCACGACAACACTGAGATTTATGAGAAGGCTGTGAAGCTTCTTGAGACATACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAAGGAGGATTCAACTTTGGTAGCACTGACGTTCCTTCTGTGCCTTCTGCCTTTTCTGGAGTTTTGGCTGGTCTATCATTAAAGTCCTACAGTATACAGGACAAAGCTGGGGTCGAATCAATGTGTTGTTTCTGTTCAAAAGGTGGTCCAACATTGGTAAATAGAGTGTTGCTGGATTGGCTCAGTTTGGAGTCTCTTAAGTTTTGGTTATACAATTGTGGGTCTTTTTGGCAAAATGCCATATGGTCGTTGGAGTTTTTACCCGTCCGTCCCTACCTATGA 1809 0.4478 MSYRPTANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSSTHSVVEKKLENLPSMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPRCRDLVLGQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQSLPCLFNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQLIDDAEGLEKIENLQSHDNTEIYEKAVKLLETYWLEEEDETMPPGDASQGGFNFGSTDVPSVPSAFSGVLAGLSLKSYSIQDKAGVESMCCFCSKGGPTLVNRVLLDWLSLESLKFWLYNCGSFWQNAIWSLEFLPVRPYL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01975 602 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Vifa3g01975 602 Gene3D - 13 52 IPR036975 GO:0006606
Vifa3g01975 602 PANTHER IMPORTIN ALPHA 14 501 - -
Vifa3g01975 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Vifa3g01975 602 FunFam Importin subunit alpha 13 52 - -
Vifa3g01975 602 SUPERFAMILY ARM repeat 14 500 IPR016024 -
Vifa3g01975 602 PIRSF Importin_alpha 5 527 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vifa3g01975 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Vifa3g01975 602 Gene3D - 73 496 IPR011989 -
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 107 146 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 148 188 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 105 146 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 274 314 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 359 399 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 316 357 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 189 231 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 233 272 IPR000225 GO:0005515
Vifa3g01975 602 SMART arm_5 402 442 IPR000225 GO:0005515
Vifa3g01975 602 FunFam Importin subunit alpha 73 496 - -
Vifa3g01975 602 Pfam Atypical Arm repeat 457 503 IPR032413 -
Vifa3g01975 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Vifa3g01975 602 Pfam Importin beta binding domain 14 95 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01975 Vifa-Chr3 496391785 496396464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01975 152 421 U-box Gene Family AT1G23030 22.593 6.50e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01975 K15042 - gmx:100789135 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01975 3 496391785 496396464 Vifa3g01975 3 496391785 496396464 ECH
Vifa5g03717 5 1195853311 1195857160 Vifa3g01975 3 496391785 496396464 ECH
Vifa3g01975 3 496391785 496396464 Vifa5g03717 5 1195853311 1195857160 ECH
Vifa5g03717 5 1195853311 1195857160 Vifa3g01975 3 496391785 496396464 PCT