Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01973 ATGGCGACACGGAATCGCACTTTGCTTTTCCGAAAGTACAGAGACGCATTGAAGAGTGTTCGTGCTCCGTCAATCTCTTCGCCGCCGTCCACCTCTTCCGGCACCGGTCCCGTCATTGAATTGGTCAGTACGTCGCTTCTCAATCCGAATCGATCTTATGCTCCGCTTAGTACTGAGGATCCCGGTAGTTCGAGTAAGGGTCTAAATCCAATTACTGTTGGGCTACCTCCGGCATGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCCCGCAAAAAAATGGCAGAGTTGTCCAAGGCTCATGCGAAGGCCTTAATGCCATCGTTTGGAGATGGTAAGGATGACCAACACGCTATTGAGTCTCTAACGCACGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCGGATACTTGCAGCTGCAGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAAAGCCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGACAGCAAAAAGAGGGGCAAGATGGAGTTGACCTAGAGATCAACATAAATGGAAGTAAATCTAGATTTGAAGACGATGACTTGGACAATATGATATTTAATGAGCATCAAATGGCCAAGCTAAAAAAGAGTGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTTAATGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAACGTGGCAACCACAGTTGAGGATGGCCTTAAACAACTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCGACGGTCCTTCTTATCATGTGCTTCGTTATGTTGGTTCTCTTGGTCATTAAGGAAATTATTTTGTGA 978 0.4489 MATRNRTLLFRKYRDALKSVRAPSISSPPSTSSGTGPVIELVSTSLLNPNRSYAPLSTEDPGSSSKGLNPITVGLPPAWVDVSEEISANVQRARKKMAELSKAHAKALMPSFGDGKDDQHAIESLTHEITDLIKRSEKRLRILAAAGPSEDSNVRKNVQRSLATDLQSLSVELRKKQSTYLKRLRQQKEGQDGVDLEININGSKSRFEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLVIKEIIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01973 325 Coils Coil 83 103 - -
Vifa3g01973 325 CDD SNARE_syntaxin16 234 290 - -
Vifa3g01973 325 PANTHER SYNTAXIN 83 310 IPR045242 -
Vifa3g01973 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa3g01973 325 FunFam Syntaxin-43 76 283 - -
Vifa3g01973 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Vifa3g01973 325 SMART tSNARE_6 224 291 IPR000727 -
Vifa3g01973 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Vifa3g01973 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Vifa3g01973 325 Gene3D - 76 283 - -
Vifa3g01973 325 Pfam SNARE domain 265 317 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01973 Vifa-Chr3 496165913 496171114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01973 1 325 SNARE and Associated Proteins AT5G26980 77.676 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01973 K08489 - gmx:100796741 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01973 3 496165913 496171114 Vifa3g01973 3 496165913 496171114 ECH
Vifa5g03520 5 1150237220 1150242620 Vifa3g01973 3 496165913 496171114 ECH