Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01966 ATGAGTAAGACTGAATTATCAAGGATGAAGCAACCGCTTGTTCCGTTAGCAACTCTGATTGGCCGGGAGCTACGGAATGGAAAAACCGAGAAGCCTTTTGTGAAGTATGGCCAGGCTGGTTTGGCAAAGAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGCCAGAGGGTTCCTGGTGATTCTTCGACGATGTTTTCTGTCTTTGCGATCCTTGATGGGCATAATGGTATATCCGCTGCTATTTTTGCAAAGGAAAACATAATAAACAATGTCATGAGTGCAATACCGCAAGGTATAAGCAGGGAGGAATGGCTTCAAGCTTTGCCTCGGGCTCTAGTTGTTGCTTTTGTGAAAACTGACATGGAATTTCAGAAAAAAGGGGAAACTTCTGGCACGACAGCTACATTTGTTATTATCGATGGATGGACTGTTACAGTTGCATGTGTTGGGGATTCCCGATGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGGGAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAACATATTTGGAGGCAACGAGGTGGGGCCACTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGCGACACAGATGTGGGAGAGTATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGGCTTATCATAGCTTCTGATGGTATTTGGGATACTTTGTCTTCTGATATGGCTGCCAAGGCATGTCGGGGTGTACCTGCTGAACTTGCTGCAAAGCTGGTGGTTAAGGAAGCTCTTAGGTCAAGAGGGCTGAAGGATGATACAACCTGCCTTGTCGTAGATATTATTCCTTCGGACTATCCTATATCGCCGATGCTATCAACTCCTAGAAAGAAACCTAACATGCTAAGTTCACTTCTCTTTGGAAAGAAATCTCAAAACTCGACAAACAAAGGAACCAATAAGCTTTCTGCAGTTGGTGTTGTAGAGGAGTTATTCGAAGAGGGTTCTGCAATGCTTACAGAAAGGCTAGGTAAGGATGTTTCTTCTAATACGAATTCTGGTATATACCGCTGTGCGGTTTGCCTAGCAGATCAACCCTCTGGCAATGGTTTATCAGTGAACACGGATCATTTTATCACGCCGGTATCTAAACCACGGGAAGATCCATTCCTCTGCACAATCTGTCAGAAGAAGAAAGACGCAATGGAAGGGAAAAGGTCCTGA 1272 0.4442 MSKTELSRMKQPLVPLATLIGRELRNGKTEKPFVKYGQAGLAKKGEDYFLIKTDCQRVPGDSSTMFSVFAILDGHNGISAAIFAKENIINNVMSAIPQGISREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDGWTVTVACVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDMAAKACRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPISPMLSTPRKKPNMLSSLLFGKKSQNSTNKGTNKLSAVGVVEELFEEGSAMLTERLGKDVSSNTNSGIYRCAVCLADQPSGNGLSVNTDHFITPVSKPREDPFLCTICQKKKDAMEGKRS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01966 423 Pfam Protein phosphatase 2C 64 281 IPR001932 -
Vifa3g01966 423 SMART PP2C_4 23 295 IPR001932 -
Vifa3g01966 423 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Vifa3g01966 423 SMART PP2C_SIG_2 50 297 IPR001932 -
Vifa3g01966 423 PANTHER PROTEIN PHOSPHATASE 46 296 IPR015655 GO:0004722|GO:0006470
Vifa3g01966 423 CDD PP2Cc 43 297 IPR001932 -
Vifa3g01966 423 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
Vifa3g01966 423 Gene3D - 33 301 IPR036457 -
Vifa3g01966 423 FunFam probable protein phosphatase 2C 5 35 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01966 Vifa-Chr3 495694253 495696330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01966 1 422 PP2C-type Phosphatase Gene Family AT1G09160 75.177 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01966 - - gmx:100794630 724.546