LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01952	ATGAGTGAGGAAGATAATAAAAGAAAGAAGAGAATCGTCATAATATGCACCTCGAGCTTTTTACTAGTGGCTATGGTGGTTGCTGTGACAGTTGGCGTGAATAATACCGAAGATGGCAACGGTAAAAGTCGCATAAATTCAACCCAGAAAGCCGTGAAAACCTTTTGTAGTCCAACAAGTTTTAAAAAAGAATGCGAGGAAAATCTATTGTCAGAAGTAGGCAGCACAACGGACTCGAGAGAACTCATGAAATTTGCTTTCAATATCACCGTTGCGAAGATCAAAAAGGGAATTGAGAAAACTCAACTCTTGCAAGAGGTTGAGAAGGAACCTAAGACGAAAATGGCACTTCAAACATGCTTGAAGTTAATGGATCTCTCTATCGGCGAATTTCAAAGGTCACTTGAGGGAATAACAAGTTTTAATCTCAACAATCTAGACAGCATTCTCGTGAGTTTAAGAGTTTGGTTAAGTGGTGCAATGACGTATCAAGAAACATGTTTAGATGGTTTTTCGAACATCACTAGTAAAGCAGGTATGAAGATGAAAGGCATTTTACAACTTTCGAGGCGTATGAGTAGTAATGCACTTGATGTCGTTACGGATTTGCAAAATGCTGTGAAGGAAATTAATGTAACAAAAGATGAACGTCGTCTTATGGAAGATTATAAAGGTTATGTTGGCGAACAAGTTGTTGCTCATGATGATGTTAACGAGGTTCCTTCTTGGTTTGGTGATGGTTCGAGTGCCGGTGTTCGTAGACTCCTTCAAGTGGCTCAAAATAAACTTAAGGCTAATGTCGTTGTGGCTCAAGATGGTAGTGGACAGTTTAAGACTATCAATGAAGCTTTGAAGCTAGTGCCAATAAATGGCCAAAAACCTTTTGTTATTTATATCAAGAAAGGTATTTATCATGAGTATGTTGACATTACCATACTAATGACTAATGTTGTGCTTGTTGGTGATGGTGATATGAAAACAATACTTACTGGCAACAAAAACATGAAAGATGGAATTGCAACTTATGCAACCCCCACTCTCGCTGTTGGAGGAGATTTTTTTGTTGCAATGAGCATAGGAATTGAGAATTCAGCAGGACCACTAAAAGATCAAGCTTGCGCCTTAAGAGTCCAAGGCGACAAGGCAATTTTTTACCAGTGTTCAATACACGGATATCAAGACACATTATATGCACACACTATGCGTCAATTTTATCGTGATTGTACAATTTCAGGCACGATTGATTATGTGTTTGGCAACGCACAAGCCGTTTTCCAGAACTGCACATTCATCGTTAGAAAACCATTAGATTACCAACAATGCATTATAGTTGCACAAGCCAGGGCAGAAGAAAACCAACCATCAGGAATAGTAATTCAAAGTAGCCGCATTGTTTCTGATCCTCCGAATGTTCCAGTCACCTACAAAGCTTTTATCGGTCGTCCATGGAAGCACTATGCGAGGACTATTATCATGGATACTTACATCGACGGGGTGATTCAGCCTGAGGGGTTTATGCCATGGGAAGAACCGGATAAACAACTTAGTGGCATGGACACTTGTTATTATGCCGAGGTTAATAATACTGGTCCTGGTTCTGATAAATCAAAGCGTGTAAAATGGCCTGGGATTAAGAATCTTACACCAGAAACTGCAAATACTTTCAATCCATCTTTGTTCTTTCAGGGAGATGATTGGATTAAGAATACTAGAATTCCTTACAGTTCTGGCGACATGCCACCCCCAAAGCAGCCAACCCCAAAACAGCCAAACCCAGCGCAGACAATCCCAACAACACCACAACAGACAACCCCAGAGCAGCCAATTCCAGCAACACCACCGCAGACAACTCCAGAGCAGCCAATCCCAACAACACCAGAACAGAAAATCCCAGAGCAGCCAATTCCAACAACACCACAGCAGACAACTCCAGAGCAGCCAATCCCAACAACACCAGAACAGACAATCCCAGAGCAGCCAATCCCAACAACACCACAGCAGACAACTCCAGAGCAGCCAACCTCAACAACACCAGAGCAGACAACCCCAGAGCAACCAATCTCAACAATACCTCAGCAGACAACTCCGGAGCAGCCAATCCCAACAACACCAGAGCCGACAACTCCAGAGCAGCCAATTCCAACACCACAACAGTCAATCCCAGAGCAGCCAATCCCAACAACACCTCAGCAGACAACTCCAGAGCCAATCCCAGTAACACCACAACAAACAATTCCAGAGCAGCCAATCCCAACAACACCTCAGCAGACAACTCCAGAGCAGCCAATCCCAATAACACCTCAGCAACCAATTCCAACAACACCACAAGAGACAATCCCAACCCCAAAGCTCTAA	2355	0.4276	MSEEDNKRKKRIVIICTSSFLLVAMVVAVTVGVNNTEDGNGKSRINSTQKAVKTFCSPTSFKKECEENLLSEVGSTTDSRELMKFAFNITVAKIKKGIEKTQLLQEVEKEPKTKMALQTCLKLMDLSIGEFQRSLEGITSFNLNNLDSILVSLRVWLSGAMTYQETCLDGFSNITSKAGMKMKGILQLSRRMSSNALDVVTDLQNAVKEINVTKDERRLMEDYKGYVGEQVVAHDDVNEVPSWFGDGSSAGVRRLLQVAQNKLKANVVVAQDGSGQFKTINEALKLVPINGQKPFVIYIKKGIYHEYVDITILMTNVVLVGDGDMKTILTGNKNMKDGIATYATPTLAVGGDFFVAMSIGIENSAGPLKDQACALRVQGDKAIFYQCSIHGYQDTLYAHTMRQFYRDCTISGTIDYVFGNAQAVFQNCTFIVRKPLDYQQCIIVAQARAEENQPSGIVIQSSRIVSDPPNVPVTYKAFIGRPWKHYARTIIMDTYIDGVIQPEGFMPWEEPDKQLSGMDTCYYAEVNNTGPGSDKSKRVKWPGIKNLTPETANTFNPSLFFQGDDWIKNTRIPYSSGDMPPPKQPTPKQPNPAQTIPTTPQQTTPEQPIPATPPQTTPEQPIPTTPEQKIPEQPIPTTPQQTTPEQPIPTTPEQTIPEQPIPTTPQQTTPEQPTSTTPEQTTPEQPISTIPQQTTPEQPIPTTPEPTTPEQPIPTPQQSIPEQPIPTTPQQTTPEPIPVTPQQTIPEQPIPTTPQQTTPEQPIPITPQQPIPTTPQETIPTPKL	784

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g01952	784	SMART	PMEI_2	47	199	IPR006501	GO:0004857
	Vifa3g01952	784	Pfam	Plant invertase/pectin methylesterase inhibitor	51	198	IPR006501	GO:0004857
	Vifa3g01952	784	MobiDBLite	consensus disorder prediction	668	696	-	-
	Vifa3g01952	784	CDD	PMEI-like_3	54	201	-	-
	Vifa3g01952	784	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	49	203	IPR035513	-
	Vifa3g01952	784	FunFam	Pectinesterase	48	204	-	-
	Vifa3g01952	784	MobiDBLite	consensus disorder prediction	697	784	-	-
	Vifa3g01952	784	NCBIfam	pectinesterase inhibitor domain	36	182	IPR006501	GO:0004857
	Vifa3g01952	784	MobiDBLite	consensus disorder prediction	578	594	-	-
	Vifa3g01952	784	SUPERFAMILY	Pectin lyase-like	264	576	IPR011050	-
	Vifa3g01952	784	ProSitePatterns	Pectinesterase signature 2.	410	419	IPR033131	-
	Vifa3g01952	784	Gene3D	Invertase/pectin methylesterase inhibitor family protein	46	205	IPR035513	-
	Vifa3g01952	784	PANTHER	PECTINESTERASE	18	570	-	-
	Vifa3g01952	784	MobiDBLite	consensus disorder prediction	603	667	-	-
	Vifa3g01952	784	Gene3D	-	260	578	IPR012334	-
	Vifa3g01952	784	MobiDBLite	consensus disorder prediction	570	784	-	-
	Vifa3g01952	784	FunFam	Pectinesterase	260	578	-	-
	Vifa3g01952	784	Pfam	Pectinesterase	266	564	IPR000070	GO:0030599\|GO:0042545

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01952	Vifa-Chr3	493946127	493948756	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01952	3	669	Carbohydrate Esterase	AT3G05610	41.520	0.0	554

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g01952	K01051		-	gmx:100794799	676.396