Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01951 ATGTCAGAGGGTGGTGATGCACAGAAAGGAAGAAGAATCGCCATAATAGGTGTATCTACCTTGTTGTTGGTGGCTATGGTTGTTGCTGTCACTGTTGGTGCGAGTCGTAACCAAAGCGGTGTCGACGACGATATTGAAAATAATAGAAGAAATCATGTTTCATCAACAATGAGAGCTGTACAATCCATTTGTCAACCAACGGATTACAAGAAGGAATGTGTGGACACCCTCACAGCCGAAGCTGAGGCAGGAAATGTGACCGATCCTAAAGAACTCATTAAAATAGCATTCAATGTTACCATGAAGAAAATTGGTGAAAAAATCAAGGAAACTGATCTCATGCATGAGGTTGAGAAGGATCCTAGATCAAAGGATGCTCTTGACACTTGCAGGCAACTGATGGATCTTTCTATTGGAGAATTCTCAAGAGCAATTGATGGTATTGAGCATTTTGATCTTAAGGATATTGACCGAATTCTCATGAATTTGAAGGTTTGGCTCAATGGTGCTGTTACTTACATGGATACATGTGTTGATGGTTTTGACAACACTACAACTGAAGCTGGTAAAAAGATGAAGGAGATATTGACTTCAAGCATGCACATGAGTAGCAATGCTCTTGCCATCATTTCTGATTTTGCTGACACTGTTACTAGCTGGAATGTCACCAAGATGTTCGGACGCCGTCGTCTTCTTGACTCCGACACACCTTCATGGGTTAGCGAACATCGCATGCTCCTTGATGCTAACACAAGTGCATTCAAACATAAGCCTAATGTTACCGTCGCTTTAGATGGTACCGGTGATGTTAAGACCATCAACGAGGCTTTGTTGAAGGTTCCTGAGAAGAGCGAAAAGCCGTTTATCATCTACATTAAGGAGGGTGTTTACAACGAGTATGTTGAAATTAACAAGCAAATGACCTATGTTGTGTTTGTTGGTGATGGTGGCCAGAAGTCTAGAATCACTGGCAACAAAAACTTTATCGATGGTGTTAACACTTACAGAACCGCCTCAGTTGCTGTTCAAGGAGATCATTTTACCGCTATTAATATGGGTTTCGAGAACTCGGCTGGTGCACATAAACATCAAGCAGTTGCACTAAGAGTTCAAGGAGATAAGTCCATCTTCTTCAATTGTTCAATGGATGGATATCAAGATACACTTTACGTACACACCATGCGTCAATTTTACCGTGATTGCACAATTTCCGGTACCATTGATTTCATCTTTGGTAATGCCTTATCCGTATTCCAAAACTGCAAATTCGTGGTCAGGAAGCCTATGGCAAATCAACAATGTATTGTCACCGCACAAGGAAGGAAAGAAAGATTCCAGCCATCAGCCATTGTCATTCAAGGAGGTTCCATCGTTTCTGATCCTGCGTTCTATCCAGTCAGATTCGACCACAAGGCCTACCTAGCTCGTCCATGGAAGAATTTCTCTAGAACCATCTTCATGGATACCTTCATTGACGATTTGATTCACCCCGACGGTTATATGCCATGGCAAACACCTGAGGGGTTTACCGGCATGGACACTTGCTTCTATGCTGAATATCATAACTATGGACCTGGTTCAAACAAAACTAAGCGTGTGCATTGGGCTGGAATATGGAACCTTAACTCAGATGCTGCACATTGGTTTGCACCATCCAAATTCTTCCATGGAGGTGACTGGATTGAAGAAACTGGAGTACCTTTCTATGGAAGTATACCTGACCACCATAGGCACAAAAAGACATCGCTTAAATGGTGA 1758 0.4226 MSEGGDAQKGRRIAIIGVSTLLLVAMVVAVTVGASRNQSGVDDDIENNRRNHVSSTMRAVQSICQPTDYKKECVDTLTAEAEAGNVTDPKELIKIAFNVTMKKIGEKIKETDLMHEVEKDPRSKDALDTCRQLMDLSIGEFSRAIDGIEHFDLKDIDRILMNLKVWLNGAVTYMDTCVDGFDNTTTEAGKKMKEILTSSMHMSSNALAIISDFADTVTSWNVTKMFGRRRLLDSDTPSWVSEHRMLLDANTSAFKHKPNVTVALDGTGDVKTINEALLKVPEKSEKPFIIYIKEGVYNEYVEINKQMTYVVFVGDGGQKSRITGNKNFIDGVNTYRTASVAVQGDHFTAINMGFENSAGAHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGNALSVFQNCKFVVRKPMANQQCIVTAQGRKERFQPSAIVIQGGSIVSDPAFYPVRFDHKAYLARPWKNFSRTIFMDTFIDDLIHPDGYMPWQTPEGFTGMDTCFYAEYHNYGPGSNKTKRVHWAGIWNLNSDAAHWFAPSKFFHGGDWIEETGVPFYGSIPDHHRHKKTSLKW 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01951 585 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Vifa3g01951 585 NCBIfam pectinesterase inhibitor domain 55 211 IPR006501 GO:0004857
Vifa3g01951 585 CDD PMEI-like_3 62 214 - -
Vifa3g01951 585 PANTHER PECTINESTERASE 18 562 - -
Vifa3g01951 585 Gene3D - 253 572 IPR012334 -
Vifa3g01951 585 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Vifa3g01951 585 SMART PMEI_2 55 209 IPR006501 GO:0004857
Vifa3g01951 585 Pfam Plant invertase/pectin methylesterase inhibitor 59 209 IPR006501 GO:0004857
Vifa3g01951 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
Vifa3g01951 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Vifa3g01951 585 SUPERFAMILY Pectin lyase-like 257 569 IPR011050 -
Vifa3g01951 585 FunFam Pectinesterase 253 572 - -
Vifa3g01951 585 FunFam Pectinesterase 56 214 - -
Vifa3g01951 585 Pfam Pectinesterase 259 557 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01951 Vifa-Chr3 493851766 493853613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01951 1 568 Carbohydrate Esterase AT3G05610 47.636 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01951 K01051 - gmx:100776244 915.605