Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01950 ATGGCTGCGAATAACAATGCACATAAAGGAAGAAGAATTACCATAATCGGCGTATCTACTTTGTTATTGGTGGTGATGGTTGTTGCTGTCACTGTTGGAAGAAATAGTAATCGTATTGATCATGAGGATAATTTAGAACATAATAGAAAGAATCATGTTGCTTCTACAATGAAAGCGGTACAAAACATTTGTAAACCCACGGATTTCAGGAAAGAATGTGAGGAATCCTTAAAAGTAGAAGCAGAAGCCCGCAATGTTACCGACCCAAAAGAACTCATTAAAATTGCATTCAATGTTACCATCAAGAAACTTGGTGAAAATTTCAAGGAAACTGATCTCATGCAAGAGGTTGAGAAGGACCCTAGATCCAAGGATGCACTTGATACTTGCAAGAAACTTATGAATCTCTCAATTGATGAACTCACAAAATCACTTGAGGGAATAGGTAACATTAATCTTCAAGATATTGATCAAATTCTCATGAATTTGAAGGTTTGGCTCAGTGGTGCTGTTACATACATAGATACGTGCTTAGATGGATTTGAAAACACTACTACTGATGATGGTAAAAAGATGAAAGAGTTATTAACCTCAAGCATGCACATGAGTAGCAATGCCCTTGCAATCATTTCAGATTTTGCAGACACTTTTTCAAATTGGAATGCCTCAAAAGTTGTTGGACGTCGTCTTCTTCATGATCCTGAGAGTACTCCTTCTTGGGTTGAACATCACAAACTTGTCGATGTAAACACAAACACATTAAAACAAATGCCTAATGTTACCGTAGCTTTAGATGGTAGCGGTGATTTTAAGAGCATTAATGAAGCATTGTTGAAGGTTCCTGAAAAGAGCAAAAAAGCATTTGTAATTTATATTAAGGGAGGTGTTTATAGAGAGTATATTGAAGTTACCAAGCATATGACTCATGTTGTGTTTTTTGGTGATGGTGGTCAGAAGACAAGAATCACTGGCAACAAAAACTTTGTTGATGGAATTAACACTTACAACACTGCCACTGTTGCCATTCAAGGAGATCACTTTACCGCTATTAATATGGGTTTTGAGAACTCAGCTGGTCCACACAAACATCAAGCAGTGGCAATAAGAGTTCAAGGAGATAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAAGATACACTTTATGTACACGCAATGCGTCAATTCTATCGCGATTGCACAATTTCAGGTACCATTGATTTTGTATTTGGTAATGCATTATCTGTATTCCAAAACTGCAAATTTGTGGTGAGAAAGCCTATGTCAAACCAAAAATGTATTGTGACTGCACAAGGAAGGAAAGAAAGATTCCACCCATCAGCCGTAGTCATTCAAGGAGGTTCTATTGTTTCTGATCCTGCATTCTATCCGGTCAGGTTTGACAACAAGGCTTACCTAGCTCGTCCATGGAAGAATTTCTCTAGAGCCATTTTCATGGACACCTTCATTGATGATTTGATTCACCCTGATGGTTATTTGCCATGGCAAACACCTGAAGGTTTTTCTGGCATGGACACTTGCTTCTATGCGGAATACCATAACTATGGCCCTGGTTCAAACAAATCAAAGCGTGTGCATTGGGCTGGAATTCGGAACCTCAATTCAAAGACTGCATATTTGTTTGCACCATCCAAATTCTTCCATGGTGGTGACTGGATTCAGGCAACTGGAGTTCCTTACTTTTCCACTATTCCTCAACATCATAAGCACAACAAGACATTGATTAAATGGTGA 1758 0.3834 MAANNNAHKGRRITIIGVSTLLLVVMVVAVTVGRNSNRIDHEDNLEHNRKNHVASTMKAVQNICKPTDFRKECEESLKVEAEARNVTDPKELIKIAFNVTIKKLGENFKETDLMQEVEKDPRSKDALDTCKKLMNLSIDELTKSLEGIGNINLQDIDQILMNLKVWLSGAVTYIDTCLDGFENTTTDDGKKMKELLTSSMHMSSNALAIISDFADTFSNWNASKVVGRRLLHDPESTPSWVEHHKLVDVNTNTLKQMPNVTVALDGSGDFKSINEALLKVPEKSKKAFVIYIKGGVYREYIEVTKHMTHVVFFGDGGQKTRITGNKNFVDGINTYNTATVAIQGDHFTAINMGFENSAGPHKHQAVAIRVQGDKSIFFNCSMDGYQDTLYVHAMRQFYRDCTISGTIDFVFGNALSVFQNCKFVVRKPMSNQKCIVTAQGRKERFHPSAVVIQGGSIVSDPAFYPVRFDNKAYLARPWKNFSRAIFMDTFIDDLIHPDGYLPWQTPEGFSGMDTCFYAEYHNYGPGSNKSKRVHWAGIRNLNSKTAYLFAPSKFFHGGDWIQATGVPYFSTIPQHHKHNKTLIKW 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01950 585 Gene3D - 254 572 IPR012334 -
Vifa3g01950 585 SUPERFAMILY Pectin lyase-like 259 570 IPR011050 -
Vifa3g01950 585 Pfam Plant invertase/pectin methylesterase inhibitor 59 209 IPR006501 GO:0004857
Vifa3g01950 585 FunFam Pectinesterase 253 572 - -
Vifa3g01950 585 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Vifa3g01950 585 PANTHER PECTINESTERASE 18 562 - -
Vifa3g01950 585 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Vifa3g01950 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 213 IPR035513 -
Vifa3g01950 585 CDD PMEI-like_3 63 214 - -
Vifa3g01950 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 213 IPR035513 -
Vifa3g01950 585 Pfam Pectinesterase 259 557 IPR000070 GO:0030599|GO:0042545
Vifa3g01950 585 SMART PMEI_2 55 209 IPR006501 GO:0004857
Vifa3g01950 585 FunFam Pectinesterase 56 214 - -
Vifa3g01950 585 NCBIfam pectinesterase inhibitor domain 54 211 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01950 Vifa-Chr3 493397354 493399212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01950 4 568 Carbohydrate Esterase AT3G05610 47.619 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01950 K01051 - gmx:100776244 880.552