Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01947 ATGGGTATCGATCTGAAAGCAGGAGGTAAGAACAAGAAGTCCAAGAGAACTGCACCAAAGTCCAATGATATCTACCTCAAGCTCTTGGTCAAGCTTTACAAGTTCCTTGTTCGAAGAACTGGCAGCAAGTTCAACGCTGTTATTCTCAAGAGGTTGTTCATGAGCAAGGTTAACAGGCCTCCTCTATCTTTGTCAAAGTTGATCAAGTATACCGAGGGGAAGGAAGGTAGAATTGCTGTAGTTGTGGGTGCTGTAACTGATGATATCCGTGTGTACGAAGTTCCAGCCATCAAAGTTGTAGCACTTAGGTTTACAGAGACTGCAAGGGCAAGGATTGAAAAGGCTGGAGGAGAATGCTTGACATTCGATCTCTTGGCTAGTATGGCCCCTCTGGGACAAAACACGGTCCTTCTTAGAGGTCCAAAGAATTCTCGTGAAGCAGTGAAGCACTTTGGTCGTGCTCCTGGTGTTCCACACAGCCACACCAAACCTTATGTAAGAGCAAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGAAACAGCCGAGGATTCAGAGTTTGA 564 0.4574 MGIDLKAGGKNKKSKRTAPKSNDIYLKLLVKLYKFLVRRTGSKFNAVILKRLFMSKVNRPPLSLSKLIKYTEGKEGRIAVVVGAVTDDIRVYEVPAIKVVALRFTETARARIEKAGGECLTFDLLASMAPLGQNTVLLRGPKNSREAVKHFGRAPGVPHSHTKPYVRAKGRKFEKARGKRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01947 187 Gene3D - 1 187 - -
Vifa3g01947 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vifa3g01947 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Vifa3g01947 187 FunFam 60S ribosomal protein L18 1 187 - -
Vifa3g01947 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vifa3g01947 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01947 Vifa-Chr3 493327214 493328538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01947 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 73.656 1.87e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01947 K02883 - gmx:100500164 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01947 3 493327214 493328538 Vifa3g01947 3 493327214 493328538 ECH