Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01936 ATGGATTCCAACAACAAATCTTCCGAACAAGTCATTTCAGAATTGGTTGAAATGGGTTTCGAGCATTCCAAAATTCTCAAAGCCATAAAAGTAGTGGGTCTATCGATTCCAAGCATTGTGGAACATATCTTCAATACTAACACTAGTACTAGTAAAAGCAGTGATTGTGAACCATCCACTAGTAATGGGAATGCTCTCAAAAAACGAACTTTTTCATCTTCCTTTCAAGTTCCGAAGCCGAGAACAATCAACCATTATTTTCAATCCACTGATAAAGGCAATGCGAGAAAGAAAAATGATATTGTTGTTGTTGTTGATGATGATGATGACGATGATGATGATGACGTGGAAGAGGGCAAGGAGCCATTACCTCTAATGGGTATTGATATTGATCGCGGTGTTCCTCGAGATTTGGATGTTGCGTCGGATTGGGAGCAAAGAGCTAGTGTTTTGTTGCAAAAACATTTTGGTTTTTCATCCTTGAAAAGTTTTCAGAAGGAAGCTCTCTCTGCTTGGATTGCGCACAAAGACTGTCTTGTTCTGGCTGCAACTGGATCTGGGAAATCTCTGTGCTTTCAGATTCCGGCTCTGTTAACCGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCATGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCGTGTTTTCTTGGATCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAATATAGTGTATGTTTGCCCAGAGACAGTTCTAAGATTGATTCAACCTCTGCAGAAGCTTGCAGAAAGCCGTGGTATAGCTTTGTTTGCAATTGATGAGGTGCACTGTGTTTCTAAATGGGGTCATGATTTTCGTCCTGCTTACAGCCGACTATCTGCATTGAGGGAAAATTTCACTGTTGGCAAGCTAAAATCCCTGAAATTTGATATACCTATAATGGCATTGACAGCTACAGCTACAAAGAGAGTTCAAGAAGACATTTTAAAATCTCTACGCATGTCAAAAGATACAAATGTTGTTCTCACATCATTTTTTCGTCCTAATTTACGCTTCACGGTAAAGAATAGTAGAACATCATGGGCTTCTTACGAGAAAGATTTTCATGAGCTGATTAAAGTATATGACAGTATTTCTTCTTATGATGTGGACGGCGATGAAGATGACTGTGATGATAAAGATAGTAATGCAATGCACTCACGAAACACCGGCAATCATAAGAAAAGAAGAAAATTGACAGTTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTTGCATGTGGTGAATTTTGTGTGCAACCTCCTCCCAAGCAATGTGAGTTATCTGAGACAATTGATGCACCTACAAAACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTTGGACAAGGACCTACAATTATATATGTACCCACCAGAAAAGAAACAGTGAGAATTGCGAAGTATCTATGCAAGTCTGGCGTGAAGGCTGCTGCTTATAATGCCGGGCTGCCCAAGTTGCATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCATTTGGAATGGGAATTGACAAATCGAATGTTAGAAGAATCATTCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGAAATGACAAAACAAGCGTATATCATGTTGTCCGATTGTTTCAGATATGGAATGAATATTTCATGTTGTCGAGCAAAGACACTTGTAGAATACTTCGGAGAGGATTTCAGCCATCAGAAGTGTCTCTTATGTGATGTGTGTACTAATGGACCACCTCAAAGGAAGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAGGGTCCCATAATGCACGTAACTATTCCATGGATTCCTCATATATTGATGATATCCATTTTGATTCCGAGGATAGAAGACTAGGAGAGAGGCCAAGTCTTATGACGTTAGTTAGAAATATAAGGGAACAGTTTCAAAAATTTGTAACAACTGATATATTATGGTGGAGAGGACTTAGTCGAATTTTGGAAGCTAAAGGATTTATCAGGGAAGGAGACAACAAGACCAATGTTCAGATAAAATACCCGGAACTAACAAAACTAGGTTTGGAATTCATGAAGTCCGAGACTGAGGAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAAAACTGACAAACCATTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGCAACATGATAGAAGTCCAACAAAGCGGCAAAGCCCCGGAAAGCGAAGAAAGAGGAAAGGTAGAAAAGCGAAACCTGATTTGAGGACTTCTCGAGGTAGACTAACAGCAAAGCTTTCAAAACTTAAGTGA 2547 0.3989 MDSNNKSSEQVISELVEMGFEHSKILKAIKVVGLSIPSIVEHIFNTNTSTSKSSDCEPSTSNGNALKKRTFSSSFQVPKPRTINHYFQSTDKGNARKKNDIVVVVDDDDDDDDDDVEEGKEPLPLMGIDIDRGVPRDLDVASDWEQRASVLLQKHFGFSSLKSFQKEALSAWIAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYNIVYVCPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTVGKLKSLKFDIPIMALTATATKRVQEDILKSLRMSKDTNVVLTSFFRPNLRFTVKNSRTSWASYEKDFHELIKVYDSISSYDVDGDEDDCDDKDSNAMHSRNTGNHKKRRKLTVEFLENDVDVFQSADDLDVACGEFCVQPPPKQCELSETIDAPTKPEKRLKMLKEPFGQGPTIIYVPTRKETVRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEEMTKQAYIMLSDCFRYGMNISCCRAKTLVEYFGEDFSHQKCLLCDVCTNGPPQRKNLKEEACILLQTIGSHNARNYSMDSSYIDDIHFDSEDRRLGERPSLMTLVRNIREQFQKFVTTDILWWRGLSRILEAKGFIREGDNKTNVQIKYPELTKLGLEFMKSETEEAFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLERMQHDRSPTKRQSPGKRRKRKGRKAKPDLRTSRGRLTAKLSKLK 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01936 848 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 611 IPR001650 -
Vifa3g01936 848 MobiDBLite consensus disorder prediction 48 71 - -
Vifa3g01936 848 PANTHER DNA HELICASE RECQ FAMILY MEMBER 141 736 - -
Vifa3g01936 848 NCBIfam RecQ family ATP-dependent DNA helicase 151 380 IPR004589 GO:0004386|GO:0006310
Vifa3g01936 848 Gene3D - 133 353 IPR027417 -
Vifa3g01936 848 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Vifa3g01936 848 SMART ultradead3 157 362 IPR014001 -
Vifa3g01936 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 583 IPR027417 -
Vifa3g01936 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 286 IPR027417 -
Vifa3g01936 848 MobiDBLite consensus disorder prediction 815 832 - -
Vifa3g01936 848 SMART helicmild6 492 573 IPR001650 -
Vifa3g01936 848 Pfam DEAD/DEAH box helicase 164 332 IPR011545 GO:0003676|GO:0005524
Vifa3g01936 848 FunFam ATP-dependent DNA helicase 584 762 - -
Vifa3g01936 848 Pfam Helicase conserved C-terminal domain 465 572 IPR001650 -
Vifa3g01936 848 Gene3D - 585 769 IPR036388 -
Vifa3g01936 848 Gene3D - 455 582 IPR027417 -
Vifa3g01936 848 MobiDBLite consensus disorder prediction 800 848 - -
Vifa3g01936 848 FunFam ATP-dependent DNA helicase 455 582 - -
Vifa3g01936 848 Pfam RecQ zinc-binding 595 645 IPR032284 -
Vifa3g01936 848 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Vifa3g01936 848 MobiDBLite consensus disorder prediction 800 814 - -
Vifa3g01936 848 FunFam ATP-dependent DNA helicase 132 353 - -
Vifa3g01936 848 Gene3D - 2 50 - -
Vifa3g01936 848 CDD DEXHc_RecQ 152 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01936 Vifa-Chr3 492261325 492266239 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01936 467 591 Eukaryotic Initiation Factors Gene Family AT5G11170 25.600 3.03e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01936 K10900 - gmx:100793222 1167.91