LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01934	ATGAGTTTTGGTTTTGAGTTTCTTACTATGATGTTGTTCATCATCATTATGACAGTGTTATTGATTCCTTTATCTATATCATCACTATCATCACAAAGTACTAACATTTTGAGTGTTGGAAGCTTCCATGTTGATAGTTTACAAGATAGTTATTTCATGAGGGAGAAAAATGAAGAGGTGGTGAAAGTTGAGAAAATCTCAGGTTTAGATGAGAATGAAGAGAAACATGGTTTTATAGTTGAAAAGTTTAGATCTTTACTTGGTTTAAAGAGTTTTCACAAAAGGGTACATTCTAAATCCAATGGTGAAGAAGCTACATCACCTTCTCTAGCACCAGCACCGGCTCCGGCGCTGGCGCCATCTGAAGGATTGCATTTGCATTCTCGTTCTCATTCTCATCATCCAAAACATCATTTTCATTGGAAGCAGATACCAAAGAAGGTTCATCATGAAGATGATAGAGACAGAAGAGATACAAGAATACTAGTAGCCGTTTTTGTTTCTGTTGGAGTTGCTTCGTTGGTTGGTGCTTTTGGTTTGATGCTATTTTGCAGGAAAAAATTCACAAATCACAAAAAGAAGAAACCAAAGAGAACAATGCCTCTTTGTAGCAGCAATAGCAAAGGAAGAACAAAAGGTACTAGTTATCAAAATTCTTCAGGACTAGATCTGTTTTATCTTGATGCATTAGGTGAAGATATTGAGCAACAAAATGCTTGTGGCTTGAAAAAGACTAGTGAGGAAATTGTTTCTGTTCATGAAGAGGTGGAAATGGTTGTTGATGGCAAAAATTTATCTGATAAAATTGTTCATGAAGATTGTGGTTCATCAGAGGATGAAAGTTTTCATTCTTTGGTTGATTCACAATCAAATTTGAGACTCTCTAATGCTTCTGCTTCTAGTCTTGGTGACACAAACTCTTTGGTGTCACCTCAAAATTCATTTTCTTTGTTACCAAACCAAGTACCTAGTTCTCCACAAAACTCAACCTCAAACACACATGAAGAGATTGAAACCTTTGTTCAATGTTCAAAAACATACACTTCCTCTCCTGCTCCTCCTCCTCCACCACCACCCCCGACACCGCCTTTGAAAATGCCACTCTTTTCTTTACATTCACTAACATCTTCATCTAGAGTTTCATCTCATACTTTGTCTTCTCCTATAAATTCAGAAACTTCTTCAAGATCAAACCAAAGTCTTGGAAAGGATTCATTTTCTCTATCTCCACCTAACCTCACAAAATCTCCTCCTCCACCGCCATGTCCTCCTCAATTTCCAAAAGGAAATAGCAACAACAAGGCCAAAACACCTCCTCCTCCACCATATGAATTCCCTCCATCACCACTTGGTAAAGATGGTACACCATTGGCTAAACTCAAACCTCTTCATTGGGACAAAGTAAGAGCTGCACCAAACCGCACAATGGTTTGGGACAAACTAAGATCAAGCTCATTTGAATTTGATGAGGAAATGATTGAGTCACTTTTTGGATACAATTTGCAAAATTCAATGAAAAATGATGAAAGTAAGAGTAAAACACCATCTCCAAGCAAGCATGTACTAGATCCAAAGAGGTTGCAGAACATAACAATACTCTCAAAGGCTCTTAATGCAACAGCTGAACAAGTATGTGATGCACTAATGCAAGGGAAAGGATTGTGTTTGCAACAACTTGAGGCACTAGTGAAAATGGTACCTACCAAAGAAGAAGAGTCAAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAAGTTTGTGAGAGCAGTGCTTTGTGTCCCATTTGCCTTTCAACGAGTAGAAACTATGCTTTACAAAGAGACTTTTGATGATGAAGTTGTTCACCTAAGAAATTCATTTTCAATGCTAGAGGAGGCATGCAAGGAGTTAAGATCAAGCAGACTGTTCTTGAAACTTCTAGAAGCAGTACTAAAAACAGGAAACCGAATGAACGTAGGAACGATAAGGGGAGGTGCGAGAGCATTCAAACTGGACGCTCTACTAAAGCTAGCAGATGTCAAAGGAACAGATGGAAAAACCACCTTACTCCACTTTGTTGTTCAAGAGATTGTTCGGTCAGAGGGAATACGCGTTTCAGAGAGCATAATGGGAATGGGAAAAATAAGCCAAAAAAGCAACAAAAACAGAACAGAAGAAGAGAAAGAAGAAGACTACAGAAAAATGGGACTAGAACTAGTGTCTGGTCTCAGCACAGAATTATACAACGTTAAAAAAGACAGCGACAATCGACTTAGATGTTCTCGCTAG	2283	0.3841	MSFGFEFLTMMLFIIIMTVLLIPLSISSLSSQSTNILSVGSFHVDSLQDSYFMREKNEEVVKVEKISGLDENEEKHGFIVEKFRSLLGLKSFHKRVHSKSNGEEATSPSLAPAPAPALAPSEGLHLHSRSHSHHPKHHFHWKQIPKKVHHEDDRDRRDTRILVAVFVSVGVASLVGAFGLMLFCRKKFTNHKKKKPKRTMPLCSSNSKGRTKGTSYQNSSGLDLFYLDALGEDIEQQNACGLKKTSEEIVSVHEEVEMVVDGKNLSDKIVHEDCGSSEDESFHSLVDSQSNLRLSNASASSLGDTNSLVSPQNSFSLLPNQVPSSPQNSTSNTHEEIETFVQCSKTYTSSPAPPPPPPPPTPPLKMPLFSLHSLTSSSRVSSHTLSSPINSETSSRSNQSLGKDSFSLSPPNLTKSPPPPPCPPQFPKGNSNNKAKTPPPPPYEFPPSPLGKDGTPLAKLKPLHWDKVRAAPNRTMVWDKLRSSSFEFDEEMIESLFGYNLQNSMKNDESKSKTPSPSKHVLDPKRLQNITILSKALNATAEQVCDALMQGKGLCLQQLEALVKMVPTKEEESKLFNYKGDINELGSAEKFVRAVLCVPFAFQRVETMLYKETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSESIMGMGKISQKSNKNRTEEEKEEDYRKMGLELVSGLSTELYNVKKDSDNRLRCSR	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	311	458	-	-
	Vifa3g01934	760	Pfam	Formin Homology 2 Domain	453	751	IPR015425	-
	Vifa3g01934	760	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	450	760	IPR015425	-
	Vifa3g01934	760	PANTHER	FORMIN-RELATED	27	750	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	98	152	-	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	349	366	-	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	434	449	-	-
	Vifa3g01934	760	Gene3D	Formin, FH2 domain	451	736	IPR042201	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	194	216	-	-
	Vifa3g01934	760	SMART	it6_source	450	760	IPR015425	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	200	216	-	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	311	348	-	-
	Vifa3g01934	760	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	463	701	-	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	412	427	-	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	370	411	-	-
	Vifa3g01934	760	MobiDBLite	consensus disorder prediction	129	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01934	Vifa-Chr3	492224420	492227398	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01934	192	750	FH2 protein (formin) Gene Family	AT3G05470	56.198	0.0	540

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g01934	-		-	gmx:100793761	782.711