Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01928 ATGGCAGAATCAACCAAAGAAGTCGAAGATAAAACCTTCGAAGATCTAGGGTTAGACGCACGACTCATCCGCGCCTTATTGAAGAAAAAAATCGAGAAACCAACTCCAATTCAAGAGCACGCGATTCCGCATATTCTGGAAGGTAAAGACGTCGTTGCTCGAGCAAAAACAGGTTCCGGGAAAACACTTGCATACCTTCTCCCGTTGCTTCAGAAGCTCTTTACTAGTAGTGTTGATAGGAAAAAGTTAGCGCCTAATGTTATTATTCTTGTTCCGACTACTGAACTCTCTCAACAGATAGGTGTGGAAGTTAAGTCACTGCTTGAGTTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAAAATGCTTGCTACCGACTTGCAAGCAGCATTGGTTGGACCTCCTGATGTTTTGATTTCCACTCCTGCTTGCATAGCTAAGTGTTTGTCCAACTCAATACTTCTGCCAGCATCAATTAATGACTCGCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATTTGGGTATGAAAATGACATAAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTTCTCATGTCTGCAACATTAAGTGACGATGTTGACAAACTAAAAAATTTGATTTTACACAACGCCATAGTTTTGACTTTGGCCGAAAAGGAAAACCATAAGGATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCTTGTCCTGCCAATGATAAGTTGCTCTACATCCTTGCTATGTTGAAGTTGGAGTTAGTCCAAAAGAAAGTTTTGATATTCACTAATAACATAGATACAAGTTTCAGATTGAAACTTTTCTTGGAGAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAATTGCCTCAAAATTCCCGTCTACATATTCTCGAGGAATTCAATGCTGGCCTTTTTGATTATCTAATCGCAGCAGATATCAGCCAGTCAACTGAGAAGGATGAAGTGCCTAAGGAAAATGTTGTTGGATCGCGAAAGTCTAGAAAACACGCAAAGCTAAAATTAGATTCTGAATTTGGAGTAGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCGCAGTGTGGCAGGATACGTACATCGAATTGGACGGACTGGAAGAGCATACAGTTCCGGTGCTTCTATCACCTTGGTTTCTTCAGATGAGATGGAGACCTTTGAAGAAGTAAGATCTTTTGTTGGGGACGATGAAAACAACGTTGGCTCACCCTCAATTGCTGAGTTTCCCTTACTCACCAAGAATGCAGTAGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGTGAATCACGAGCCCAGGATTTGAGAAATGAGATTTTGAACTCTGAAAAGTTGAAGTCCCACTTTGAAACTAATCCAAGAGACCTAGCTCTATTGAAACATGACAAAGTTTTGAGCAAGAACGCCCCTCCTCCACACCTTCGGGATGTGCCAGACTACCTAATAGACAAATCAACAAAAGAGGCAAGGGAAATGGTTAAGCTTACAAGAGATGCAATGGGAAATAATAAACGCCGAGGGGGTTCCAAGAGAAAATCAAGAAAAGGCGGTGACCCTCTGATGGCCATCTCTACTGGGGTATCAAAAAGACCGCACAGAGGTTTTAAAAAGGAAGGTGCAAGCAATGGCAAAAACAATGATAGACAAAAACACAAAAAGGCAAAGGCGTTTTGA 1773 0.41 MAESTKEVEDKTFEDLGLDARLIRALLKKKIEKPTPIQEHAIPHILEGKDVVARAKTGSGKTLAYLLPLLQKLFTSSVDRKKLAPNVIILVPTTELSQQIGVEVKSLLELCRVQLKVVQLNSKMLATDLQAALVGPPDVLISTPACIAKCLSNSILLPASINDSLETLVLDEADLLLSFGYENDIKALTPHIPRSCQCLLMSATLSDDVDKLKNLILHNAIVLTLAEKENHKDEVIPKNVQQFWISCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAADISQSTEKDEVPKENVVGSRKSRKHAKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVAGYVHRIGRTGRAYSSGASITLVSSDEMETFEEVRSFVGDDENNVGSPSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKSHFETNPRDLALLKHDKVLSKNAPPPHLRDVPDYLIDKSTKEAREMVKLTRDAMGNNKRRGGSKRKSRKGGDPLMAISTGVSKRPHRGFKKEGASNGKNNDRQKHKKAKAF 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01928 590 MobiDBLite consensus disorder prediction 529 590 - -
Vifa3g01928 590 MobiDBLite consensus disorder prediction 564 580 - -
Vifa3g01928 590 Pfam Helicase conserved C-terminal domain 251 394 IPR001650 -
Vifa3g01928 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 410 IPR027417 -
Vifa3g01928 590 CDD DEADc_DDX56 18 225 - -
Vifa3g01928 590 SMART helicmild6 280 394 IPR001650 -
Vifa3g01928 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 11 39 IPR014014 GO:0003724
Vifa3g01928 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 42 223 IPR014001 -
Vifa3g01928 590 PANTHER RNA HELICASE 7 522 - -
Vifa3g01928 590 Pfam DEAD/DEAH box helicase 35 212 IPR011545 GO:0003676|GO:0005524
Vifa3g01928 590 CDD SF2_C_DEAD 240 403 - -
Vifa3g01928 590 SMART ultradead3 30 243 IPR014001 -
Vifa3g01928 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 223 IPR027417 -
Vifa3g01928 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 441 IPR001650 -
Vifa3g01928 590 Gene3D - 1 225 IPR027417 -
Vifa3g01928 590 Gene3D - 226 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01928 Vifa-Chr3 491977592 491985243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01928 3 435 Eukaryotic Initiation Factors Gene Family AT3G19760 25.115 7.13e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01928 K14810 - gmx:100800749 924.465