Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01927 ATGAACGGTGGTGAGGGAGACAAAACGTTGCCCATAGCAAATGTGGGTAGAATAATGAAGCAAAATCTTCCTCCAAAAGCAAAGATCTCAAAAGAAAGCAAAGAACTGATGCAAGAGTGTGCGACAGAGTTCATAAGCTTCGTGACAGGTGAAGCATCCGACAAGTGTCACAAGGAGAATCGAAAGACAGTTAGTGGAGATGACATCTGTTGGGCTCTGTGTTCGTTAGGGTTTGACAACTATGCTGAAGCCATTGGAAGGTACTTGTATAAATACAGACAAGCTGAACTTGTTAAAATCAATCACAACAAACTTGAATCCGCAAAAGACAAGTTTCAACAAGATTCAACAAATCCATAA 360 0.4056 MNGGEGDKTLPIANVGRIMKQNLPPKAKISKESKELMQECATEFISFVTGEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRYLYKYRQAELVKINHNKLESAKDKFQQDSTNP 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01927 119 Gene3D Histone, subunit A 1 118 IPR009072 GO:0046982
Vifa3g01927 119 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa3g01927 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Vifa3g01927 119 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Vifa3g01927 119 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vifa3g01927 119 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vifa3g01927 119 SUPERFAMILY Histone-fold 7 103 IPR009072 GO:0046982
Vifa3g01927 119 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01927 Vifa-Chr3 490899315 490899674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01927 7 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 71.429 4.58e-51 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa3g01927 CBFD_NFYB_HMF 9.5e-26 CL0012