Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01924 ATGGCTGATTTTCAGACATCTACCCACCGAGCCAGGTGGATCTTTTCTCCACAACAACTGGTTGAGAAATATACAGCTGCTAATCAGAGAGCCAGACAAACCCTAGAGAAGTGTGGAGCATCTCTAATGGAAGTAGATAGTAACGGGTCTTTGTCATATCCTGAACCCCAGACAACCGCAAGCGATAGTGCTGAAAAACATTCTCGGGTAAAACCTCTTAGTAATGAAGAAGAACGATGTATGAAGGTATTTTATGAAATTAAGCTACAAGAAGTGTGCAACAATTTCCACTTCCCTCATAAGATCCAGGCTACAGCCCTCATATTTTTTAAAAGGTTCTATCTGCAATGGTCGGTGATGGAGCATCAACCCAAAAATATAATGTTGACCTGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCGGCTGAGGAGCTTGGTAAGGGGATTTCGCAAGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTCTGGATTTTGATCTTATAGTTTATGCTCCATATCGCTCAGTTGAAGGTTTTACAGATTATATGGAGGAGTTTTGCAATGCTGGCGAGGACGAGCTTCCAAAATTCAAGGCTTTGCAAGATACGGCTGGGCGGGAAGTTGATAAAATGATGCTTACAGATGGCGCCACTCTTATTTACTCCTGGGCAGTCTGTTTCATCCCAACGCAGTTGGCCTTGGCCGCTCTACGTACCTCAAATGCACTCCATAAAGTTGTCGACTTTGATAGTTTTCTGAGCAGAGTTTTTTCCCTTAAGAGTTCTACACACACAATGGACGAACTTCTTGAATCATTGGATGCAATTGATTCTTGGGTTAGAAAATACGTAAGTCCGTCAGAGAAGGAATTGAAGCATATCGACCGGAAACTGAAGTCTTGTTGGGGTCATAGCTCTCATGACGAGGGAAAGAAAAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAAAGAAGCTCAAAATGATGGAGTGTTGAAGAGCTTGAAAACATTGACATAA 1047 0.4145 MADFQTSTHRARWIFSPQQLVEKYTAANQRARQTLEKCGASLMEVDSNGSLSYPEPQTTASDSAEKHSRVKPLSNEEERCMKVFYEIKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLDFDLIVYAPYRSVEGFTDYMEEFCNAGEDELPKFKALQDTAGREVDKMMLTDGATLIYSWAVCFIPTQLALAALRTSNALHKVVDFDSFLSRVFSLKSSTHTMDELLESLDAIDSWVRKYVSPSEKELKHIDRKLKSCWGHSSHDEGKKREKKSKHKSRKSSKEAQNDGVLKSLKTLT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01924 348 SUPERFAMILY Cyclin-like 66 176 IPR036915 -
Vifa3g01924 348 PANTHER CYCLIN 31 332 IPR043198 GO:0006357|GO:0016538
Vifa3g01924 348 SUPERFAMILY Cyclin-like 179 312 IPR036915 -
Vifa3g01924 348 FunFam cyclin-H1-1 63 175 - -
Vifa3g01924 348 CDD CYCLIN_AcCycH_rpt1 3 174 - -
Vifa3g01924 348 Gene3D - 63 175 - -
Vifa3g01924 348 MobiDBLite consensus disorder prediction 47 72 - -
Vifa3g01924 348 SMART cyclin_7 87 168 IPR013763 -
Vifa3g01924 348 MobiDBLite consensus disorder prediction 47 61 - -
Vifa3g01924 348 CDD CYCLIN_AcCycH_rpt2 177 311 - -
Vifa3g01924 348 Pfam Cyclin, N-terminal domain 70 174 IPR006671 -
Vifa3g01924 348 MobiDBLite consensus disorder prediction 308 348 - -
Vifa3g01924 348 Gene3D - 177 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01924 Vifa-Chr3 490469362 490473610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01924 1 287 Core Cell Cycle Gene Families AT5G27620 60.279 6.97e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01924 K06634 - gmx:547736 533.872