Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01919 ATGGCACCTCCAAGGAAGTCTAGAAGTGTGAATAAGCGGTTTACAAATACAAATGATCTTTCTCCTGAGAAAGATGGAGTTGGCTCAAGTAAAAATAAGCACAGGAAGAAGAAACTGTCTAATAAATTGGGATCTCAGTGGAGTAAGCAGGAACTTGAGCGATTCTATGAAGCATACAGAAAATATGGGAAAGATTGGAAGAAGGTGGCTGCTGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGGACGGCTTCTGTTGTGGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAAGGAGAGCAATGATGCACCAGGATCTCGGAAACCTGTGAAACGAAAGCGTGAAAAAATTCAGTTTAGTGTTTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCAGTTGGGAAGAGGACACCCCGAGTTCCAGTCTACCACTCTTACAAAGATGATAGGGAAAATTATGTTTCACCTAATAAAAGAAGTTTGAAGTCCACTGCTGATGCTAATGATGACGAAGCTGCACATGTAGCTTTGACATTAACCAGGGCTTCACAAAGAGGAGACTCTCCCCTTTCTCAAACACCACATAGGAGAACAGGGCAGAAGTCCTCTCTTGTTCAGAGCCGGGAAAGAAAGCAAATATCAGAAAAGACTCGTGCCAAGTTACACAATGTTCCTGTGGGTGAAGAGTTTGTGGAAGGTAGTCTAGAAAGCAGAGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCTTGATAGATATGGAAGGAACGAGCACCGCTGGAGTTCTTCTAAAGAAAGGAAAATTTTATAGAAAAAAAGAGAAATTGGAAAATATTGGAAATGATCAGCTTGATGATGGAGGAGAAGCATGCAGTGGTACTGAAGAAGGACTTAGTGTTAGGTCTTTGAAGGAAAATAATATGGAGGGTACTAATGAAAGGCTTGAGCAATTCTCTCCAACAAGTCAGCGGAAAAAAAGCCAAAACCTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGACATCTAAAGTAGAATCTGATTCACCTGTCCAGTTGAAGGGAGAAAGAATGACTGTTGTTAAAGATGACAAGTCTGCTTTACCTGAAGCAACTTCAACAAGTCATAAGAGAAATAAAGTTAGACTCCGCGGGGTCTCTGTAGCCGACACTTCAACGTCCAAAAAAGCTAAACTCGGAAAAGATATAGCAAATGATACCAGTGCTCTTTCTGAATCAAAAGAGCAGCTTCCGTTTGCTGATAAAACATGGAAAAGAAAGCACAAGTCCACTGTTTCAAAGGCTGTGGATGATGGGAACAAACCTGCAATTAAAGGAAAACAAACTGATCATGTTATTGCCTCACCAAAACAATTGAAGATGGTCAAACCATCAGAGGTTGTCTTGCGTGGTGATCAGAAAGTCTTAGCAATATCAACCGCTGAAATTCCACTTTTGAGTGAAATTAGTTCTCCAACCAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCTAAAGAGAAGTCTTCTGAGAATATATTGAAAAACAAACCTAATAACTACTCTACCCAAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTGGGGCTGGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGTAAACCACGCAGGTTTTCTGAACATTTTTTACATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAGCATTATTCTGAGCTGCGGACTGGTGTCAGAGACGGACTTCCGACAGATTTAGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACTGTTGACCATGACAAGTGCAGAATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATAACTAAAGAACCACAGATTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCATTCCTCACCTGTAAAGGTACACTCCTCTTCAAGTGCTTCAGTAAAGCAAGGAAAGGTGGATGCTAACCATGCCACTTCCCAGACCAATATTGATAACCTCTGTGCTCAAGCTGCTTGTGCTCAACCGTCTCAAGTGATGCAACATGAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAGAAGGAGACAGTGCTAATAGAACTTCGAAATGCAAATAATGGCATATTGGAAAATCAAAACGGCATAGAATGTTTAAAAGATCCCGAAGGTTTCAAGAAGCACTATGCCACGGTTTCTGATACCATGCTTCAATTAAGGCAACGCAACACCTACATGGACAACTCTTTCCCACCATGGATGAAGCCCAAAGCAGATTTTGAAGTTAATGATGATCTTCCTAGTGTGTTGGATAATTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATTGTTAAAAGATCCAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAGGATTGGACAGGCATTGGATTCTATTGATTATCAGCAATTGTCCTCTAAGTACAGGTTGCCTGTGATAAGGTCCCAAGATCAAGTGAATGGCAGTTTTTATCAGCATAATCAATCGACTTGCAAAGCATCCGAGCCTTTACTTAATGATGCATCTGGTCCAAAATTGCATAAAGATTCTGATGAAGTTGATTTTGAAATACCGTCAGAGCTCATCACTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACAGAACGACAATACCCTCCAGCAGATGTGGCTCGGATATTAGATTCTGCTGTTACCAGCTTGCAACCGTGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3345 0.4114 MAPPRKSRSVNKRFTNTNDLSPEKDGVGSSKNKHRKKKLSNKLGSQWSKQELERFYEAYRKYGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEKESNDAPGSRKPVKRKREKIQFSVSKDPVQSQSVTSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKDDRENYVSPNKRSLKSTADANDDEAAHVALTLTRASQRGDSPLSQTPHRRTGQKSSLVQSRERKQISEKTRAKLHNVPVGEEFVEGSLESRGAENGEYARDTSSLIDMEGTSTAGVLLKKGKFYRKKEKLENIGNDQLDDGGEACSGTEEGLSVRSLKENNMEGTNERLEQFSPTSQRKKSQNLFFGDEIHALNALQTLADLSLMMPTSKVESDSPVQLKGERMTVVKDDKSALPEATSTSHKRNKVRLRGVSVADTSTSKKAKLGKDIANDTSALSESKEQLPFADKTWKRKHKSTVSKAVDDGNKPAIKGKQTDHVIASPKQLKMVKPSEVVLRGDQKVLAISTAEIPLLSEISSPTKQRSRRKMIFQRPSMPKEKSSENILKNKPNNYSTQKEKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGVRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNPLDNMPEALRRQIGARKASFITKEPQINGNSSFGGCEMHSSPVKVHSSSSASVKQGKVDANHATSQTNIDNLCAQAACAQPSQVMQHEAKEADIHALSELKRALDKKETVLIELRNANNGILENQNGIECLKDPEGFKKHYATVSDTMLQLRQRNTYMDNSFPPWMKPKADFEVNDDLPSVLDNSMTQESRSTVIEIVKRSRLRAHAMLDAAFQAWSQATKEGKDAITRIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYQHNQSTCKASEPLLNDASGPKLHKDSDEVDFEIPSELITSCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01919 1114 Coils Coil 660 680 - -
Vifa3g01919 1114 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 564 583 - -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 9 25 - -
Vifa3g01919 1114 PANTHER LIN-9 1 1114 IPR010561 GO:0006351|GO:0017053
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 116 158 - -
Vifa3g01919 1114 Pfam DIRP 607 708 IPR033471 -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 116 144 - -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 1 44 - -
Vifa3g01919 1114 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Vifa3g01919 1114 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Vifa3g01919 1114 SMART DIRP_2 608 709 IPR033471 -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 186 201 - -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 226 246 - -
Vifa3g01919 1114 Coils Coil 846 866 - -
Vifa3g01919 1114 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Vifa3g01919 1114 CDD SANT 47 81 IPR001005 -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 247 261 - -
Vifa3g01919 1114 Gene3D - 5 99 - -
Vifa3g01919 1114 SMART sant 43 91 IPR001005 -
Vifa3g01919 1114 MobiDBLite consensus disorder prediction 174 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01919 Vifa-Chr3 490136952 490146882 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g01919 DIRP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01919 - - gmx:100816217 1536.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01919 3 490136952 490146882 Vifa3g01919 3 490136952 490146882 ECH
Vifa5g03789 5 1219112483 1219116315 Vifa3g01919 3 490136952 490146882 PCT