Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01896 ATGTTGTTTCCTGCAGGAAATTCAAAGCATTGGATTGTTAGAATGGATAAGCCTGGTGTTGGTGTTGTTACCAAAGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTTAAGGGAAATGAAAAAGATGCACAAATGTGTTTGTATCATGACTGTGCACTTGAGTTAACTGGTGTGCCTGGTGTCTTGTCGGTTCAGCCAGACCATAATTTTGAGTCTGAAAATAAGAATTATGAAGGATTAAACTTGGAAAATAGGCTGAATGCGCCTAGTTCTTTGGAAGAAACTCAGGAAACTCCAGTGAAAACGAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATATGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTCATCATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATATGCCGCAGAAGAGGCTGCAAGTGCAACACTCAAAGAGATGAACGACAAGACTACCCCGCCAAGATACAACAAAGGTCGCGCCAGACCATCTGCATGA 558 0.3943 MLFPAGNSKHWIVRMDKPGVGVVTKAQIVDYYAQILTKVKGNEKDAQMCLYHDCALELTGVPGVLSVQPDHNFESENKNYEGLNLENRLNAPSSLEETQETPVKTKKLFVTGLSFYTYEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYAAEEAASATLKEMNDKTTPPRYNKGRARPSA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01896 185 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 2 172 IPR039206 GO:0016554
Vifa3g01896 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Vifa3g01896 185 SMART rrm1_1 107 184 IPR000504 GO:0003723
Vifa3g01896 185 Gene3D - 66 180 IPR012677 -
Vifa3g01896 185 MobiDBLite consensus disorder prediction 162 185 - -
Vifa3g01896 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 180 IPR000504 GO:0003723
Vifa3g01896 185 SUPERFAMILY RNA-binding domain, RBD 97 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01896 Vifa-Chr3 487810113 487812463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01896 93 165 C2H2 Transcription Factor Family AT2G19380 32.877 1.68e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01896 - - mtr:11405373 286.574