Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01887 ATGCTACTATCTAATCGGCACTTGGAATTTTATAAAAGTGCACTTCCTCAACCTTTGACTTCGATTCAGCGTCTTTATATTAGTCGGCTAGTTGAGAAATATGGAGCTGATTTTCAGAGAATGATGATGGATATAAAGCTAAATCCTATGCAGCATTCTGTTGCAACTTTAGAGAAATTGTGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCATCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGATTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTTCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATTCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACTCAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTATGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGTACACATCTCTGTTTCCTAA 831 0.4019 MLLSNRHLEFYKSALPQPLTSIQRLYISRLVEKYGADFQRMMMDIKLNPMQHSVATLEKLCICCCRTVNQNYANILLMLLRLHQACDHPLLVKEYNSDPVGKDSVEMAKRIPKEMLINLFNSLETTSAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDSLSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMILRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVHISVS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01887 276 PANTHER THREONINE-TRNA LIGASE 134 272 - -
Vifa3g01887 276 PRINTS Threonyl-tRNA synthetase signature 220 233 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa3g01887 276 PRINTS Threonyl-tRNA synthetase signature 176 204 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa3g01887 276 PRINTS Threonyl-tRNA synthetase signature 247 259 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa3g01887 276 Gene3D Bira Bifunctional Protein; Domain 2 101 245 IPR045864 -
Vifa3g01887 276 SUPERFAMILY Class II aaRS ABD-related 240 271 - -
Vifa3g01887 276 SUPERFAMILY Class II aaRS and biotin synthetases 114 239 IPR045864 -
Vifa3g01887 276 Pfam Ribosome biogenesis protein Nop16 13 61 IPR019002 -
Vifa3g01887 276 Gene3D - 246 275 IPR036621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01887 Vifa-Chr3 486033281 486035632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01887 67 136 RAD5 or RAD16-like Gene Family AT1G50410 67.143 3.24e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01887 K01868 - gmx:100812652 260.766