Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01885 ATGTGTTTACCTGAAAAGGAAATTGATAGAGCAAAAGACATGGCACTAGAAGCAGTGGTTTATCCACAAATACAAGACCCTTTTGGTTATGGAATCAAAGACTTTTACAACTTCAACTTCAACAACGTTGCTGCAAAAGAACAACTACATGAACAGCTACAAGAACAAGAACAAAGATCTTTCAGTTTTGTAGAAAACCAAGCAGAAAATCACTATCCTTATTATGGTGATTGGAATAACAATAGCTCTACTTTTTCTTCTCAGCATTTGAATGAAGTTCAAGAAACTACTACTGATCCGAGTAGTAATAACACTCAGAACTTGGATACTTCAACTTCCATTGACACGGTTGTTCCTCCGAAAAGGCGCAGAGCTAGAAGCAGAAAAAACAGAGAAGAAATTGAGAATCAAAGAATGACTCACATTGCTGTGGAGCGTAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGATTCATACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGAGCTATCAACTTTGTAAAAGAGCTTGAACACAAGTTTCAATTTCTTGGTGCTATGAAAGAAAAAGAGATGAAATCTGATGATGATGATGCTGGTGGATCAAAGAAAAAGCCATTTTCTGAGTTCTTTTCTTTTCCACAGTATTCAACAAGTACTTGTAATTCTGCAGCAGTTTTTGGTGAAAAAGTTGGTGAGATTCAGTCTTGCATTGCTGACATAGAAGTAACAATGGTTGAAAGCCATGCAAATCTTAAAATAAGATCCAAAAAGAGACCAAAACAGCTCTTAAAAATGGTGTCTGGTTTTCATAACATGCGTCTCACTATCTTGCATCTAAATGTTACCACTTCTGCTGAATTTGTTCTCTTCTCTCTCAGTGTTAAGGTTGAAGAAGATTGCAAGCTGGGATCAGTGGATGACATAGCTGCAGCTGTATACCAAATGGTGGATAGGATTCAACAAGAGGCTATGTTAAATTAA 1014 0.3698 MCLPEKEIDRAKDMALEAVVYPQIQDPFGYGIKDFYNFNFNNVAAKEQLHEQLQEQEQRSFSFVENQAENHYPYYGDWNNNSSTFSSQHLNEVQETTTDPSSNNTQNLDTSTSIDTVVPPKRRRARSRKNREEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEHKFQFLGAMKEKEMKSDDDDAGGSKKKPFSEFFSFPQYSTSTCNSAAVFGEKVGEIQSCIADIEVTMVESHANLKIRSKKRPKQLLKMVSGFHNMRLTILHLNVTTSAEFVLFSLSVKVEEDCKLGSVDDIAAAVYQMVDRIQQEAMLN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01885 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Vifa3g01885 337 PANTHER MAX DIMERIZATION, MAD 67 334 - -
Vifa3g01885 337 MobiDBLite consensus disorder prediction 89 131 - -
Vifa3g01885 337 SMART finulus 142 193 IPR011598 GO:0046983
Vifa3g01885 337 Gene3D - 130 193 IPR036638 GO:0046983
Vifa3g01885 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983
Vifa3g01885 337 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Vifa3g01885 337 MobiDBLite consensus disorder prediction 89 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01885 Vifa-Chr3 485814604 485815928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01885 14 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.708 2.52e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g01885 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01885 - - pvu:PHAVU_007G181900g 401.364