Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01879 ATGGAAGTTAATACAACTACCATTGTACCTTCAGGGCCACCTATTGTTTCTACAAAGAACCATACTTTCATTCGCCATTACCATCACTTACATTCAGGAAACAATTACCATAGCCATGCTCACCATTTTCCTTTCAAAACCATTCTCTTAATTGTCACATTGGTTGCCTTAATTATGCTCTTATTTACCATTTTTATGGTTGTATGCTTGATCCGTCGCCAAAAATCTTCAACCAAAAATGGGATTTACAAAGAGGATTGTGAAAGTAGAGTGCTTCATGACACAAGCAGCAGACACATAGCTTCAACAATCTTGTCTTTTGATTCTAGCCCAGATGTTAAAAGTGGGTGTCTTTATGGGGGAAATTTGAGCAGAACACCAACCACGCCTAAATTTAAAGGAGTACAAGTTTTCACGTATAGAGAGCTAGAAGCTGCTACGGGTGGATTCAGTGAAGCTAATGTGATTGGTAATGGTGGAGTTAATGGTTTGATATATAAAGGAGTCTTAACCGATGGAACTTTGGCAGCAATTAAGTTGCTGCACATTGAGGGTAAGCAAGCAGAGCGTGGCTTCAAAATAGAGGTCGATCTTCTAAGCCAATTGCGTTCACCTTATTTGGTGGAGTTACTTGGCTATTGTGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCAAATGGAACACTCCAAAACCATCTTCACTCAACCAATGATAAAACTCAACCATTAGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCTAGGGCATTGGAGTTCTTGCATGAATATGCTGTATCACCCGTGATCCACAGAGACTTCAAGACTTACAATGTTTTACTGGATCAAAACTTTCGTGCAAAGGTGTCAGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAGAAATGGCCAGGTTTCTACCCGTGTGTTGGGGACCACAGGATATTTGGCACCAGAGTACGCTTCCACGGGTAAGCTTACTACAAAGTCAGATGTTTACAGCTACGGGGTAGTTCTTCTCGAATTGCTGACAGGACGTGTACCGGTTGATATTAAGCGCCCCACTGGAGAACATGTTCTTGTCTCTTGGGCTCTTCCAAGGTTGACAAACAGAGAAAAAGTAGTAGAAATGGTTGACCCAGTTCTACACGGGCAGTACTCAAAGAAGGCTTTAGTTCAGGTAGCTGCCATCGCAGCAATGTGCATACAACCAGAAGCTGACTACCGGCCACTAATGACAGATGTGGTACAATCATTGATACCACTTGTGAGGACACAATCTCTTTCCAGTTCACTAAGATTTCAGAAACAAATACCAATTTATTAA 1341 0.4183 MEVNTTTIVPSGPPIVSTKNHTFIRHYHHLHSGNNYHSHAHHFPFKTILLIVTLVALIMLLFTIFMVVCLIRRQKSSTKNGIYKEDCESRVLHDTSSRHIASTILSFDSSPDVKSGCLYGGNLSRTPTTPKFKGVQVFTYRELEAATGGFSEANVIGNGGVNGLIYKGVLTDGTLAAIKLLHIEGKQAERGFKIEVDLLSQLRSPYLVELLGYCADQHHRLLIFEYMPNGTLQNHLHSTNDKTQPLDWWARMRIALDCARALEFLHEYAVSPVIHRDFKTYNVLLDQNFRAKVSDFGLAKMGSEKRNGQVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPTGEHVLVSWALPRLTNREKVVEMVDPVLHGQYSKKALVQVAAIAAMCIQPEADYRPLMTDVVQSLIPLVRTQSLSSSLRFQKQIPIY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01879 446 PANTHER OS07G0668900 PROTEIN 129 432 - -
Vifa3g01879 446 FunFam Receptor-like serine/threonine-protein kinase ALE2 227 441 - -
Vifa3g01879 446 CDD STKc_IRAK 156 427 - -
Vifa3g01879 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vifa3g01879 446 Pfam Protein tyrosine and serine/threonine kinase 156 424 IPR001245 GO:0004672|GO:0006468
Vifa3g01879 446 SUPERFAMILY Protein kinase-like (PK-like) 127 424 IPR011009 -
Vifa3g01879 446 Gene3D Phosphorylase Kinase; domain 1 123 226 - -
Vifa3g01879 446 Gene3D Transferase(Phosphotransferase) domain 1 227 442 - -
Vifa3g01879 446 ProSiteProfiles Protein kinase domain profile. 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01879 Vifa-Chr3 485183607 485186366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01879 39 437 Receptor kinase-like Gene Family AT3G58690 55.062 3.68e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa3g01879 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01879 - - gmx:100499645 655.21