Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01875 ATGAATTTGATAGTTTTTTCCTTGATGTGTGTTGATTTCACCTGGAACAGAATGGATCATCAAGGTCATGGCCAAAACCCAGCTATGGGAGTTGTTGGTAGTGGACAAATGGCCCCTTATGGTTCTAATCCATACCAGCCCAACCATATAACTGGGTCACCTGGGATGGTTGTTCCCTCTGTTGGGAATATTCAGCCTGGTGTTCAACCAGACGGAACTCAGATGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAACAGCAGCAACAGCAACAACTCCAGACCTTTTGGGGAACTCAATATCAAGAAATTGAGAAGGTAACTGATTTCAAAAACCACAGTCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCCGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTATTTGCAAGGGCGTGCGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGACTCACACTGAAGAGAACAAAAGACGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACCGGAACTGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGGCCAATGCCTGTTGGAGGGCCTGCTGATGGAATTCCTTATGGCTATATGCCACCTCATCATCCACAACAAGCTGGAAATCCCGGTCTCATGATGCATAATCCAAACATGTATGCTCCACAGTCTCATCCATACATGGCACCTCAAATGTGGCCTCAACCACCTGAGCAACCACCATCGCCTTCAGATCATTAG 822 0.4501 MNLIVFSLMCVDFTWNRMDHQGHGQNPAMGVVGSGQMAPYGSNPYQPNHITGSPGMVVPSVGNIQPGVQPDGTQMGQHQLAYQHIHQQQQQQQQQQLQTFWGTQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWTHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYGYMPPHHPQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPPEQPPSPSDH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01875 273 SUPERFAMILY Histone-fold 86 190 IPR009072 GO:0046982
Vifa3g01875 273 MobiDBLite consensus disorder prediction 250 273 - -
Vifa3g01875 273 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 219 - -
Vifa3g01875 273 Pfam Core histone H2A/H2B/H3/H4 79 181 IPR007125 GO:0003677
Vifa3g01875 273 MobiDBLite consensus disorder prediction 256 273 - -
Vifa3g01875 273 FunFam Nuclear transcription factor Y subunit gamma 84 196 - -
Vifa3g01875 273 Gene3D Histone, subunit A 80 196 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01875 Vifa-Chr3 484175099 484175920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01875 18 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.115 2.65e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa3g01875 Histone 4.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01875 K08066 - gmx:100527803 349.362