Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01871 ATGGAAGATGAATCGGCCACCAATTCACACGATTCGATTTGCCCAATCTGCCTTGGACCCTTAACTCAAGATTCCTATCTCGACCATTGTTTGCATAAATTTTGCTTCAATTGCATTCTCCGCTGGACCAAAGTTGTTTCCTCCAAGCACCAAACTCCACCTTCTTCCGTAAAATGCCCCCTTTGTAAGACAGATAACTTTTCTATCATTTATGGACTTGATGGAACTTCCTTTCAACGCCATTATATTAATACAAATCTTCAAGATTGTTTTGTGTTATCAAAAGGACACAGATATAGGTTACAATGCTATTATACTCAACAAGGTTTCTTAGAAGACATATTTAATATATCACTCTATTGGAAATCTCGTAAGTATAATCAGCCAAATAAATGGCTTCGCACTTGGTTAACAAGGGAAATTCAAGCCCTTACTCAGGAAGAGGATGTTGACATCATTGTGCACCATATCTCTGGTGTGGTAAAACCATTATGGACAAGTAAAGAACAGAAGCTGCTCACAAAAGAACCTGAAAAGATACAGGAAGAGTTCATGATGTCGGTCTCTGAAGCAGCCAGGCCTTTTCTGGGAGCAAGAACAGACAGATTTGTGCATGAGATTCAACTATTTCTTGCTTCAGGATTGAATATCGAAGCTTATGATGCAGTTTACATACAACGATTAGGTTGGAGCTCACCTGGGGTAAACACTGAAGTTTCTCAAAATGAATTGATTGATCGCACTACTGTGATTCCATATCTCTACATATTTGATGACGACTCTGATGGGAATGAGTAG 798 0.3897 MEDESATNSHDSICPICLGPLTQDSYLDHCLHKFCFNCILRWTKVVSSKHQTPPSSVKCPLCKTDNFSIIYGLDGTSFQRHYINTNLQDCFVLSKGHRYRLQCYYTQQGFLEDIFNISLYWKSRKYNQPNKWLRTWLTREIQALTQEEDVDIIVHHISGVVKPLWTSKEQKLLTKEPEKIQEEFMMSVSEAARPFLGARTDRFVHEIQLFLASGLNIEAYDAVYIQRLGWSSPGVNTEVSQNELIDRTTVIPYLYIFDDDSDGNE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01871 265 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 224 - -
Vifa3g01871 265 Pfam Zinc finger, C3HC4 type (RING finger) 14 62 IPR018957 GO:0046872
Vifa3g01871 265 SMART ring_2 14 62 IPR001841 -
Vifa3g01871 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 83 IPR013083 -
Vifa3g01871 265 ProSitePatterns Zinc finger RING-type signature. 30 39 IPR017907 -
Vifa3g01871 265 SUPERFAMILY RING/U-box 9 70 - -
Vifa3g01871 265 ProSiteProfiles Zinc finger RING-type profile. 14 63 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01871 4 76 C3H Transcription Factor Family AT5G19430 35.065 2.44e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01871 - - mtr:11406437 460.299