Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01865 ATGGAGTGCAACAAGGATGAGGCTGTGAGGGCTAAGCAAGTGGCAGAGAGTAGAATGCAAAATGGTGAATATGTAGAGGCACTGAAGTTTGCTAACAAGGCGAAAAGACTGTACCCTGATGTTGAAAACATTGCTCAGATTCTTGCAGTCTGTGAGGTTCACAGTGCTGCATTGAACAAACTCTATAGGGCTGAAATGGACTGGTATGGAATTCTTCAGACAGAGAAACTCTCGGAAGAAGCTGTCATAAGAAAACAGTACAGAAAGCTTGCACTGTTACTTCATCCTGATAAAAATAAATTTGCCGGGGCAGAAGCTGCTTTCAAGTTGATCGGGGAAGCCAATGGGATCTTGAATGACCAAGCAAAGCGGATTTTACATGATATGAAAGTTAGAGCCCATTTACAAGAGATGAAAGTTAAAGTCCATTTGAAAACTGCAGTGCCTAACACCTCATCCCATCACTCAAATGGGAACATGTTTGTTGCAAACCAAGCTCCAAATGCAACAAAATATCAGAAAAATGTTTCTTCAAATATCCCTTGTGATCCCAATCTGAAACTTCAGACATTCTGGACAGCTTGCAATCACTGTAATACCAGGTTCCAGTTCTACATATATATTAAGAATAGAGCCTTAGTCTGTCAAAACTGTAAGAAAAGCTTTATAGCTTTTGGTTTAACTCCACAGACTACCACATCATATGTACCATTTGGTGCCTCGAAAGCGGTTCCAATGCAGGTTCCACCAAAACCAGGCTCAACAAGTAAAGATGGAAATTCCCTCGGCGGTGGAAGTGCAGATACTTTTGTTCGGTCATATACTCCAAGTATGAAAACCTGTGCTACTGGAGTTGGTAAGGAACCTAAAGATGAAAAGAGTAAGGAACCTAAAGATGGAAAGCGTAAGGATGGCTATGTTCCCGTGTCCAAACCAAAGGAGTCACAAGCCTCAAAGAATGTTGGAAGTAAGAGAGTGAGACAACCAGAACCAGATTTAAAAGATAGATCCAACACTAGAAATAATGAAGAAAATCAAGATGTCAATGTTCGAGAAAATGTTGCTGATCCTTCAAGTTTGAACGTTAGAAGGTCCTCCAGACAAAAGCAACATGTTTCATATGTGGAAAATCATGAAGATGAAAATTACAATGTTCCTTCCAAAAAGCACCGGCAAAATGAAGAAATTTTAAGGAATACAAGCAAAGATGAGCGTTCAGATTATGATCCTAGAAGGTTCAAAGACGAAAACTGCTCTCCATTGAATTCAGATATTCCTTCTAGTCCAGAGATAATTGTTTGCCCTGATCCAGATTTCAATAATTTTGAGAAAGATAAGGCTGAGAATTGTTTTGCTGTTAATCAATTATGGGCAATTTATGATACCTCCGATGCTATGCCAAGATTTTATGCTTTTGTCAAGAAAGTAGCCTCCCCTTTCAATTTGCAGATTACATGGTTGGAAGCTGACCCAGATGAGGATGACGAGGTTGATTGGTTCAATGCAGATTTGCCTATTGCTTGTGGTAAATTCAAACTTGCTAATTCTCAGAAAACTGCAGACATTGGTATGTTCTCTCACCAGATTCAGTGTATAAAAGGAAATGACAAAAATTCTTACCTAGTGTTTCCCAACAAGGGAGAAACTTGGGCAATTTTCAGCAACTGGGATATCGAATGGAGTTCTAATCCAGAAAATTTTCTGAAGCATGAATTTGCTTTTGTGGAAATCGTATCAGATTTTTCTGAAAATGTTGGCGTTGTAGTAGCTTGCCTAGGCAAAGTGGAAGGCTTTACAAGTCTCTATGAGAAAACTGGAAAGAATGGAGAGAACACATTTTGTATTCTGCCAAAAGAGCTATATAGATTCTCACATCAAGTTCCTTCATATAAGATGACCGGTGATGAAAGGGAAGGTGTTCCAAAAGGATGTTTTGAACTTGATCCTGCAGCTCTGCCAGCTAACATCTTTGAAGCTGCTGATGCATGGAAGTGA 1995 0.395 MECNKDEAVRAKQVAESRMQNGEYVEALKFANKAKRLYPDVENIAQILAVCEVHSAALNKLYRAEMDWYGILQTEKLSEEAVIRKQYRKLALLLHPDKNKFAGAEAAFKLIGEANGILNDQAKRILHDMKVRAHLQEMKVKVHLKTAVPNTSSHHSNGNMFVANQAPNATKYQKNVSSNIPCDPNLKLQTFWTACNHCNTRFQFYIYIKNRALVCQNCKKSFIAFGLTPQTTTSYVPFGASKAVPMQVPPKPGSTSKDGNSLGGGSADTFVRSYTPSMKTCATGVGKEPKDEKSKEPKDGKRKDGYVPVSKPKESQASKNVGSKRVRQPEPDLKDRSNTRNNEENQDVNVRENVADPSSLNVRRSSRQKQHVSYVENHEDENYNVPSKKHRQNEEILRNTSKDERSDYDPRRFKDENCSPLNSDIPSSPEIIVCPDPDFNNFEKDKAENCFAVNQLWAIYDTSDAMPRFYAFVKKVASPFNLQITWLEADPDEDDEVDWFNADLPIACGKFKLANSQKTADIGMFSHQIQCIKGNDKNSYLVFPNKGETWAIFSNWDIEWSSNPENFLKHEFAFVEIVSDFSENVGVVVACLGKVEGFTSLYEKTGKNGENTFCILPKELYRFSHQVPSYKMTGDEREGVPKGCFELDPAALPANIFEAADAWK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01865 664 MobiDBLite consensus disorder prediction 325 350 - -
Vifa3g01865 664 MobiDBLite consensus disorder prediction 369 418 - -
Vifa3g01865 664 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vifa3g01865 664 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vifa3g01865 664 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vifa3g01865 664 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vifa3g01865 664 MobiDBLite consensus disorder prediction 246 423 - -
Vifa3g01865 664 MobiDBLite consensus disorder prediction 285 309 - -
Vifa3g01865 664 SUPERFAMILY Chaperone J-domain 58 134 IPR036869 -
Vifa3g01865 664 CDD DnaJ 67 120 IPR001623 -
Vifa3g01865 664 Pfam Domain of unknown function (DUF3444) 429 636 IPR024593 -
Vifa3g01865 664 SMART dnaj_3 66 123 IPR001623 -
Vifa3g01865 664 MobiDBLite consensus disorder prediction 253 280 - -
Vifa3g01865 664 MobiDBLite consensus disorder prediction 351 368 - -
Vifa3g01865 664 Pfam DnaJ domain 67 127 IPR001623 -
Vifa3g01865 664 Gene3D DnaJ domain 54 152 IPR036869 -
Vifa3g01865 664 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01865 Vifa-Chr3 482782860 482784854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01865 4 224 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.278 1.50e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01865 - - mtr:25483848 830.476