Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01861 ATGGGTTGTGTAATTAGCCGAGAAGTAGAATCGGGTATTGTTTCTGAGGTGAAGGATGAGAATAGTTTGAGAGTTGGGTCGAATAGGAGGGTTGAAGAAGTGTCGACGAGTAGAGGTGATGGGAATGTGGTAGAGGTTCAGGTGAAGAAGGTTAAGGAGAAGGAAGAGAAGAGTGATGGTGATGGGGGTCAGCGGCCGAAGGGTGAAAGAAGAAGATCAAAGCCAAATCCGAGGTTAAGTAACCTGCCGAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCGTCTTGGCTTACAGCGGTTTGTGGGGAAGCACTTAATGGGTGGATTCCGCGAAAGGCTGATACGTTTGAGAAAATAGATAAGATCGGTCAAGGAACATACAGTAATGTGTATAAAGCTAAAGATACATTAACGGGTAAGATTGTTGCATTGAAAAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTCGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCCTGGAGTTTGTATCTGGTGTTTGATTACATGGTACATGATTTGGCTGGACTTGCTGCAAGCCCTGACATCAAGTTTACAGAGCCTCAGGTAAAATGTTATATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGGCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTGATTGACAGTGAAGGAGTACTTAAGATTGCCGATTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCTATGACTAATCGCGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTGGGTGCCACAGAATATGGTGTGGGTGTGGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCTGGTCGTACGGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGTTCACCTTCTGAAGAGTATTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTTAAACCTCGAGAGCCATACAGAAGAAGCATAAGAGAGCTTTTTAAAGAATTTCCACCTTCTGCTCTGCCCCTCGTGGATACACTTCTTGCAATCGATCCGGTAGAACGGAAGAGTGCTTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTCAAGAAGATCAAGAGCGGCAGCCAAAGCTCGAGTTGAAGGGGGAAAGAAGCATCGGACTCGTGATCGTGCTGTAAAAGCTGCTCCTGAAGCCAATGCTGAGCTTCAACATAATATTGATAGAAGGCGTCTAATAACTCATGCTAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCGCCGCATGAAGACGGACAACTCGGATTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTTTCTTTGGATTCAATGTCATATACCTTTTCAAAGGAACCATTTCAAGCTTGGTCAGGCCCCATAGGTAATACTACCGGTAATGGTTTCACAAAGCGAAAGAAAAACACTGCGAATACTGCGAACGATGCATTGGATTTATCAAAACCATATAAAGGAACCCTCAAGGATAAGAGTAAAGGAAAGAAAATCATAGTTTAA 1677 0.4323 MGCVISREVESGIVSEVKDENSLRVGSNRRVEEVSTSRGDGNVVEVQVKKVKEKEEKSDGDGGQRPKGERRRSKPNPRLSNLPKHLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKSKLPNATLFKPREPYRRSIRELFKEFPPSALPLVDTLLAIDPVERKSASDALRSEFFTTEPYASRRSRAAAKARVEGGKKHRTRDRAVKAAPEANAELQHNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVSLDSMSYTFSKEPFQAWSGPIGNTTGNGFTKRKKNTANTANDALDLSKPYKGTLKDKSKGKKIIV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01861 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vifa3g01861 558 CDD STKc_CDK9_like 118 402 - -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 19 87 - -
Vifa3g01861 558 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Vifa3g01861 558 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01861 558 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01861 558 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01861 558 FunFam probable serine/threonine-protein kinase At1g54610 201 440 - -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 45 76 - -
Vifa3g01861 558 Gene3D Transferase(Phosphotransferase) domain 1 201 437 - -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 418 438 - -
Vifa3g01861 558 FunFam probable serine/threonine-protein kinase At1g54610 105 200 - -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 418 436 - -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 530 558 - -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 19 36 - -
Vifa3g01861 558 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Vifa3g01861 558 SUPERFAMILY Protein kinase-like (PK-like) 112 406 IPR011009 -
Vifa3g01861 558 MobiDBLite consensus disorder prediction 542 558 - -
Vifa3g01861 558 PANTHER CELL DIVISION PROTEIN KINASE 116 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01861 Vifa-Chr3 481826576 481832703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01861 110 446 Core Cell Cycle Gene Families AT5G10270 49.311 1.59e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa3g01861 Pkinase 9.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01861 K08819 - gmx:100817289 899.042