Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01857 ATGGATGGTACAAATGAGCAGTCGGGGATTATTCCTCGGGCTATTGAAGAGCTCTTTCATCAAGCATCAGTGGATGCTTCCTCTTCTTTTACTTTTTCAATGAGTATGTTGGAAGTTTACATGGGTCATGTCAGGGATCTGCTGACTCCAAGACAGTCTTGTAGAACACATGAAACTCTCACTAAGTGCAATCTCAACATCCAAACAGATCCAAAGGGATTGGTAGAAATTGAGGGTCTCTCAGAAGTGCAGATTTCCGATTGTGCTAAAGCAAGATGGTGGTACAACAAAGGAAAACGATTCAGATCAACATCGTGGACAAATGTAAACGAGGCATCAAGCAGGTCACACTGCTTGACAAGGATAAACATATTTAGACGAGGAGATTCTACGGATGCCAAAAGTGAAACAAGTAAGTTGTGGATGGTTGATCTTGGAGGCAGCGAACGATTGCTAAAAACTGGGGCTAGAGGACTAACACTCGACGAAGGTCGGGCTATTAATCTTTCTCTTTCAGCTCTAGCTGATGTCCTTGCAGCTTTGAAGAGAAAGAGATGTCATGTGCCTTACAGAAATAGTAAGCTGACCCAGCTACTGAGAGATTCTCTCGGTGATGGCTCCAAGGTTTTGATGCTCGTGCATATTAGCCCTTCCGAAGAAGATGTTTGCGAGACGATATGTTCTTTAAACTTTGCAAAGAGAGCAAGAGCAATAGAGTCCAATAAAGAAGTACCTATGGAATTGAAAAAGCAAAAGGAGAAGAAGATTATGGAGCTCGAGGAAGACATTATGGAAGCTGAAAAAGAACGTCAGAGTTTAAGGGATCAAATACAGAAAGTTGAGTTAAAGTTAAGCGAGAATAAAAAGCTCTTTTCAACCGCATGTAGTCTTAAGGAAAATGATAACTTGGAAACTTCTACTAGCCTCAAAGATGATTTCAAAGAGGTCATTGAAACACCTAAAGTATCTAAGAAGTCTATTCAAAGAATCTCCAATTCAGTGCCTCGATTCATGAACTCAACTGTTGCTAGTCGACATAGGCAAATTGCAGCAGAACAAGAAATCGGTAGTAGAACAAAAAACTTAAGATCAATAGTCACCAGAAGTTCAATCCAGTTCCCATGTTCACAATCATTAAGTTATTCAGATCTCCGCATCAAAACAATACTGAGAAGTTCAATTGGAAAGTCTCGACATACTGGAACAAATAATGTTCCAAAAACTATCATTCATTCAGAAAGGCCCAAGTGCAATGAATTGGAACCAAAAGTCATAAGTCCTCGAAGTACAACAGTTACATCATCAGATTCAAATTTGAGAGTAACATTGTGTCGTCATAGAAGAAGGTTGTCAAATCTGATCTAA 1365 0.3971 MDGTNEQSGIIPRAIEELFHQASVDASSSFTFSMSMLEVYMGHVRDLLTPRQSCRTHETLTKCNLNIQTDPKGLVEIEGLSEVQISDCAKARWWYNKGKRFRSTSWTNVNEASSRSHCLTRINIFRRGDSTDAKSETSKLWMVDLGGSERLLKTGARGLTLDEGRAINLSLSALADVLAALKRKRCHVPYRNSKLTQLLRDSLGDGSKVLMLVHISPSEEDVCETICSLNFAKRARAIESNKEVPMELKKQKEKKIMELEEDIMEAEKERQSLRDQIQKVELKLSENKKLFSTACSLKENDNLETSTSLKDDFKEVIETPKVSKKSIQRISNSVPRFMNSTVASRHRQIAAEQEIGSRTKNLRSIVTRSSIQFPCSQSLSYSDLRIKTILRSSIGKSRHTGTNNVPKTIIHSERPKCNELEPKVISPRSTTVTSSDSNLRVTLCRHRRRLSNLI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01857 454 SMART kinesin_4 1 246 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01857 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 279 IPR027417 -
Vifa3g01857 454 ProSiteProfiles Kinesin motor domain profile. 1 238 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01857 454 PRINTS Kinesin heavy chain signature 188 209 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01857 454 PRINTS Kinesin heavy chain signature 139 157 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01857 454 PRINTS Kinesin heavy chain signature 107 124 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01857 454 Pfam Kinesin motor domain 1 238 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01857 454 Gene3D Kinesin motor domain 1 286 IPR036961 -
Vifa3g01857 454 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 376 IPR027640 GO:0003777|GO:0007018
Vifa3g01857 454 Coils Coil 249 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01857 Vifa-Chr3 481216683 481218912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01857 3 238 Calmodulin-binding Proteins AT5G65930 41.079 3.10e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01857 - - gmx:100785581 677.552