Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01856 ATGAGTGAAAGAGGGAAGAAAGAAAAACCAACCGAGAAAAAAGAGAGGATGAAGAACATCTTCAAGAAGCTTCATATAGGTAGCAGCCACGATCCTCATCGATCCAATGAAATTCCGCCACCTGTACCATCGCCGTCTGACGCCGCCGAACATGTTACACCCACTCCTTCTTCCTCGTCGCCGTCTACTGCGACTATTCCTCCTGCTTCCACTGGTGGTGGTTTGTCTGCGGTAGTCAATCGGCAAGACTTTTTCTCATCGGAAGAGGAATTTCAGGTACAGTTAGCCCTAGCTATCAGTGCTTCCAATTCGGAGTTCCGTGGTGATGATCCGGAGAAGGATCAGATCCATGCGGCAACGCTACTCAGTTTGGGAGGACATCGGATTGATTCCAATAAGGATGATGTGGCGGAGGCGCTTTCGAGGCAGTATTGGGAATACAATGTGCTTGACTATGAAGAGAAAGTAGTTGATGGTTTTTATGACATATATGGCCTCTATAATGACCCAGCAATGCAAGGAAAGATGCCATCTCTAGCTGATCTTGAAACAAACTCAGGTGGTTCTAGCTTTGAAGTAGTCATAGTTAATAGAACAATTGATCCTGCCCTGGACGAGCTGGTGCAAATTGCACACTGTATAGCATTGGACTGCCCTGTCTCTAAGATTGAAAGAAGTACAGAATTAAGGACATCTCTTCACACAAGTGTATTACCTCTTGGGTCCTTAGATATTGGGCTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCAGACAACATTCAGATGCCTTGTAGACTGGTTAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAATTAGATGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCGAAGGATAATGCCTTTAAGTCTTACAACCCCAAGATTGTGCCGAGTTTGCTTTCCGCTGAGGAAACTGAGCTTTCTTACTCAAGACCTATACCTCCCTCTAATGGTGAAGGCAGTAGTCAGACTTCTGTAATAAAAGGTACGCTGCCTTGGAATGGACAATCATATACTGAGAAGTCAGAGTATATGCCTTCAAACTTTGGTTTGAACAGAGACACTGGTGTTGGTCCATCTAAAATTCCTAATAGAGGGAGTCCTAATCAACGGGAAAATTTGCCACCTTCATATGCTAATTCTTTGTACAAAGGTACTCTTGGAATGAATGCAGTGGGTGATGGGACAAGATTGAATGTCAATGTTGTGCCATATGCCCAAAACAACCCCACCGACCCTCAAAACCTTTTTGCAGATCTGAACCCATTCTTGATAAAAGGGACTGGGAAGTCCTTTGTGCACAACAAACCTGTGGAAAATAAACCTCCTGAGCACAGTACAAAAAACAATGCCATTTCTGGTCGGCCCGTGTCACCACTGATGTGGAAGAATCAGCATGCCTACAACGAAGTCCCCAGAAAAACTAATCATAACCCTAGTGAATATTACCCTCCTTTATTAAATACTGATCTCAGCACTTCCAATTCATCATACAATTCAAATATAAATAATGATATTAGTTCTCAAACCTCTGGACAAATTACTGGTTCAGCCTCATCAGCTGGCGTAGGTGAGCTGAACTGGACCGACGGTCTCAATGCTAATTTTAGAAGGGGTGATTTAGAGAGTTCTCAAAATGTCATGGTAAAGGGATTTAACGAACCCGAAAGCACTGAACTCGGATATCGTGACAGGAGGAAGTGCATATATGACAGATTCATGGGAAGCAATTTGCAATTAAATGATTCCGATGGTCCTAGCTCTTCAATTGATTCCATTACAAACCGGGTTGATCAAATATTGGATGATGCAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGTGAGGTATACCGTGCGGACTGGAATGGCACGGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCCTTGTCCGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTCACCCGCCCTCCCAATCTCTCAATCATTTCCGAGTTTCTCCCGAGAGGAAGCTTGTACCGAATTCTTCATCGGCCTAATTGTCAGATCGATGAGAAACAAAGAATAAAAATGGCTCTTGATGTGGCTAGGGGTATGAATTGCTTGCACGCCAGCACTCCTACAATTGTTCACCGAGATCTGAAGTCCCCAAATCTTTTGGTTGATAAGAACTGGAACGTTAAGGTATGCGATTTTGGGCTGTCAAGGTTGAAGCATAACACATTTTTATCATCCAAATCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTTCGCAATGAACCTTCAAATGAGAAGTGTGATGTTTATAGTTTTGGTGTCATCCTATGGGAGCTTGCCACTCTAAAGTTGCCATGGACTGGAATGAATCCTATGCAAGTTGTTGGTGCCGTAGGTTTCCAAAATCGCCGCCTTGAAATTCCTATGGAAGTTGATCCTTTAGTAGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCGTTTGCACAGCTGACGGTGGCTCTTAAGCCCTTGCAGCGTCTGGCTCTTCCATCTCACCAAGACCAGGTAGCTCCACCTCTGCCTCAGGAGATTTCTGTAAATTCTACCCCATGA 2781 0.4383 MSERGKKEKPTEKKERMKNIFKKLHIGSSHDPHRSNEIPPPVPSPSDAAEHVTPTPSSSSPSTATIPPASTGGGLSAVVNRQDFFSSEEEFQVQLALAISASNSEFRGDDPEKDQIHAATLLSLGGHRIDSNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDIYGLYNDPAMQGKMPSLADLETNSGGSSFEVVIVNRTIDPALDELVQIAHCIALDCPVSKIERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIQMPCRLVKGSHYTGVEDDAVNIIKLDDEREFLVDLMAAPGTLIPADILNAKDNAFKSYNPKIVPSLLSAEETELSYSRPIPPSNGEGSSQTSVIKGTLPWNGQSYTEKSEYMPSNFGLNRDTGVGPSKIPNRGSPNQRENLPPSYANSLYKGTLGMNAVGDGTRLNVNVVPYAQNNPTDPQNLFADLNPFLIKGTGKSFVHNKPVENKPPEHSTKNNAISGRPVSPLMWKNQHAYNEVPRKTNHNPSEYYPPLLNTDLSTSNSSYNSNINNDISSQTSGQITGSASSAGVGELNWTDGLNANFRRGDLESSQNVMVKGFNEPESTELGYRDRRKCIYDRFMGSNLQLNDSDGPSSSIDSITNRVDQILDDADVGECEIPWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLKLPWTGMNPMQVVGAVGFQNRRLEIPMEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLALPSHQDQVAPPLPQEISVNSTP 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01856 926 MobiDBLite consensus disorder prediction 463 489 - -
Vifa3g01856 926 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 139 902 - -
Vifa3g01856 926 SMART serkin_6 645 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01856 926 MobiDBLite consensus disorder prediction 1 73 - -
Vifa3g01856 926 Gene3D Phosphorylase Kinase; domain 1 638 722 - -
Vifa3g01856 926 PRINTS Tyrosine kinase catalytic domain signature 805 815 IPR001245 GO:0004672|GO:0006468
Vifa3g01856 926 PRINTS Tyrosine kinase catalytic domain signature 719 732 IPR001245 GO:0004672|GO:0006468
Vifa3g01856 926 PRINTS Tyrosine kinase catalytic domain signature 758 776 IPR001245 GO:0004672|GO:0006468
Vifa3g01856 926 PRINTS Tyrosine kinase catalytic domain signature 824 846 IPR001245 GO:0004672|GO:0006468
Vifa3g01856 926 PRINTS Tyrosine kinase catalytic domain signature 868 890 IPR001245 GO:0004672|GO:0006468
Vifa3g01856 926 MobiDBLite consensus disorder prediction 373 405 - -
Vifa3g01856 926 ProSiteProfiles Protein kinase domain profile. 645 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01856 926 Gene3D Transferase(Phosphotransferase) domain 1 724 907 - -
Vifa3g01856 926 CDD STKc_MAP3K-like 651 894 - -
Vifa3g01856 926 ProSitePatterns Protein kinases ATP-binding region signature. 651 673 IPR017441 GO:0005524
Vifa3g01856 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Vifa3g01856 926 FunFam Serine/threonine-protein kinase isoform 1 636 723 - -
Vifa3g01856 926 MobiDBLite consensus disorder prediction 391 405 - -
Vifa3g01856 926 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g01856 926 Pfam Ethylene-responsive protein kinase Le-CTR1 137 221 - -
Vifa3g01856 926 Pfam Ethylene-responsive protein kinase Le-CTR1 224 305 - -
Vifa3g01856 926 SUPERFAMILY Protein kinase-like (PK-like) 636 917 IPR011009 -
Vifa3g01856 926 MobiDBLite consensus disorder prediction 50 73 - -
Vifa3g01856 926 Pfam Protein tyrosine and serine/threonine kinase 646 895 IPR001245 GO:0004672|GO:0006468
Vifa3g01856 926 MobiDBLite consensus disorder prediction 339 361 - -
Vifa3g01856 926 FunFam PAS domain-containing protein tyrosine kinase family protein 723 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01856 Vifa-Chr3 481201560 481211113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01856 17 881 MAP Kinase Kinase Kinase AT1G08720 53.937 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa3g01856 PK_Tyr_Ser-Thr 3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01856 - - aprc:113870732 1474.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01856 3 481201560 481211113 Vifa3g01856 3 481201560 481211113 ECH
Vifa3g01856 3 481201560 481211113 Vifa5g02800 5 926760697 926762278 PCT