Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01851 ATGGCATTCTTCAACAACCGCGTCGTTTTCCCGAAAGAGGAATATCCAGAGATCTTAGAGGAATACGAATTAGAGGAAGAGGAGGAAGAAGACGAAGACGACTATGTCTTAGAGCCACACGATTATCTCAACAACAACGAAACCGAACAATCTCATTCAACCTCCTCCGCCGTCCCTACCGTCATACTAGCCTTACCTAACGCCGCAACGGCTGTCGCCGCTGACTCCCCTGAGCCAAAACGGCAGAGAATTGACCAGGTGGAGGAGAAGAAGTCGTCCATGGAGGATTCGCGGAAATTGTTTCAGCGTCTCTGGACTGACGAGGATGAGATCGTAATCTTGCAAGGGTTCCTTGATTACAACGCGAATCGAGGATCGGCTTACCATAACGACTCTGCGTCGTTCTATGATCAGATTAAGTCGAAGCTTCAGCTCGATTTCAACAAGAGCCAGCTTGTTGATAAACTGAGAAGGTTGAAGAAAAAGTATCGTAATCTTCTCCAGAAATTCGACTCTGGCAAGGAGTTTTTCTTCAAAACCCCTCATGAGCAAGCTACCTTTGAAATTTCACACAAAATTTGGAACATTGTGACTCCAATTGGTCTTCCTGTAGAAGACGACGGCGAAATCAACCCTAACCCTAACCCTAACCCTAACCCTAACCGTAGCCCAAATTCAGGTCATACTACGCCGGTGAAGAATGAGCCGGTGATTGAGAAGAAAAGGAAAGCATCCCGAACCTCTACGGAGGAGAAGCAGCAGCGGAAGTTGATTGATAATCATAATAATTCTACTAACAACAATAGTAGCAATGCTGAAGATGAAAGTGGTGATAAGAGTAACAGTAGGCATAACGTACCTGGATTGATTGAAGAGACTGTCAAGAGTTGTCTGACTCCATTCTTGAAGGAGTTAACCAGTACTAGTAATAGTAACATGGGGAGTCCTTTTGGTTTTGGAGGGAGAGGGTTTGGTGGTGGAGGTTTTTCATTGAATCCAATGCCATTTGGTTTTCTGAATTTCGGGAATGGTGAAAAGGTGGGAGATGAAAAGTGGAAGAAGCAACAGATTTTGGAGCTGGAAGTGTATTCTAAGCGGTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCTTTGGAGGAGTTGAGGTCAAATGCTGGAGCTGGAGGAAGCAGGAAATTTTAA 1182 0.4518 MAFFNNRVVFPKEEYPEILEEYELEEEEEEDEDDYVLEPHDYLNNNETEQSHSTSSAVPTVILALPNAATAVAADSPEPKRQRIDQVEEKKSSMEDSRKLFQRLWTDEDEIVILQGFLDYNANRGSAYHNDSASFYDQIKSKLQLDFNKSQLVDKLRRLKKKYRNLLQKFDSGKEFFFKTPHEQATFEISHKIWNIVTPIGLPVEDDGEINPNPNPNPNPNRSPNSGHTTPVKNEPVIEKKRKASRTSTEEKQQRKLIDNHNNSTNNNSSNAEDESGDKSNSRHNVPGLIEETVKSCLTPFLKELTSTSNSNMGSPFGFGGRGFGGGGFSLNPMPFGFLNFGNGEKVGDEKWKKQQILELEVYSKRLELVQDEIKVALEELRSNAGAGGSRKF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01851 393 MobiDBLite consensus disorder prediction 20 37 - -
Vifa3g01851 393 Coils Coil 149 169 - -
Vifa3g01851 393 Pfam Protein of unknown function, DUF573 101 195 IPR007592 GO:0006355
Vifa3g01851 393 MobiDBLite consensus disorder prediction 43 57 - -
Vifa3g01851 393 MobiDBLite consensus disorder prediction 259 275 - -
Vifa3g01851 393 MobiDBLite consensus disorder prediction 234 258 - -
Vifa3g01851 393 MobiDBLite consensus disorder prediction 205 285 - -
Vifa3g01851 393 Coils Coil 360 380 - -
Vifa3g01851 393 PANTHER BNAANNG10740D PROTEIN-RELATED 23 380 IPR007592 GO:0006355
Vifa3g01851 393 Coils Coil 12 32 - -
Vifa3g01851 393 MobiDBLite consensus disorder prediction 20 57 - -
Vifa3g01851 393 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01851 Vifa-Chr3 480479013 480480194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01851 27 388 GeBP Transcription Factor Family AT5G28040 41.960 7.08e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vifa3g01851 DUF573 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01851 - - psat:127097903 601.282