Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01850 ATGTTTTCACCATTGGTTTCTTGGATTTTGTCAACCTCGTCTTCTTCCTCCTCCTCCTCATCTGAAGAAGAAGACGAACATGAAAATCTTGACATTAGCAATGACGAATCAGACTATGAAAACTTTCAAAACGACAATGTTGAAGACCAAATGGACGATGTGGATGATGACAACATTCCCATTGGACTTGCCATTTCTGATGCCTCCCCCGCTGTGACGGTGGCCTTGCCTGCCCCTATAGATTACACAAACACTGCCACCACTACTAAAGAAACGCGCTCAAAACGTCAACACAACAAGTATTCTGGTGGGGCGAGACAATATCAACGGATATGGACGAAGCAAGATGAGATAGAATTGTTGAAGGGATATCTGGATTACATCAAGCAACAAGGAAGAACAACCACTACTCTTCAAAGCCACGTAGCTTCCTTCTATGATCAACTCATGCCAAAATTCAGCGCGGACTTTAACAGGAACCGGATTGTTGAGAAGCTACGTAGGTTAAAAAGAAAACACAAGATGGTTTTGGACAAATGCAAAGATGTTCAGGTTTCTTTCAAGAGCTCCCACGAACAAGCCATTTTCGATATTTCCAGCAAGATTTGGGGCAATGACACAGACCATGATATTTTGGAAGTTGATGAATCTAGACCTGTTCCCGACAGTCCTGATCTTATTGACAACATTAAGATGAAAGCTGAACATGTTGACAATTGTGAAAAAACGGACAATAGGGCGCACAAGCGTGCGAGGCTCGCAGCAGACAATGATGATGCTACTACTAGTATTCATAGATTCATTGAGGAAACCATGAGGTCCTGTTTCTCGCCATTGCTGAAGGAACTATTGGATGATGCTCCGGCAGAGCCACTCGACGTGTTGCCAATGTTGTTATCCACCGAAGAAGCGAGAGATGAACAATTGTTAAAACGGAGGATTTTGGAGCTAGAAGTGTATTTGGATCGGTTGGAGTTGTTGCAGGGTCAGATCAAGACTAGGTTGGAGGATTTGAGGTCTCGCTTAGGTTGA 1032 0.4351 MFSPLVSWILSTSSSSSSSSSEEEDEHENLDISNDESDYENFQNDNVEDQMDDVDDDNIPIGLAISDASPAVTVALPAPIDYTNTATTTKETRSKRQHNKYSGGARQYQRIWTKQDEIELLKGYLDYIKQQGRTTTTLQSHVASFYDQLMPKFSADFNRNRIVEKLRRLKRKHKMVLDKCKDVQVSFKSSHEQAIFDISSKIWGNDTDHDILEVDESRPVPDSPDLIDNIKMKAEHVDNCEKTDNRAHKRARLAADNDDATTSIHRFIEETMRSCFSPLLKELLDDAPAEPLDVLPMLLSTEEARDEQLLKRRILELEVYLDRLELLQGQIKTRLEDLRSRLG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01850 343 MobiDBLite consensus disorder prediction 1 42 - -
Vifa3g01850 343 Pfam Protein of unknown function, DUF573 109 204 IPR007592 GO:0006355
Vifa3g01850 343 Coils Coil 321 341 - -
Vifa3g01850 343 PANTHER BNAANNG10740D PROTEIN-RELATED 14 335 IPR007592 GO:0006355
Vifa3g01850 343 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01850 Vifa-Chr3 480451853 480452884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01850 64 340 GeBP Transcription Factor Family AT5G28040 31.339 5.70e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vifa3g01850 DUF573 3.1e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01850 - - psat:127095443 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03886 5 1243309232 1243310605 Vifa3g01850 3 480451853 480452884 PCT