Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01847 ATGAATGGAGTTACACACTTTGAAGAAGATGACTCTGAGTTTGTTGAACTTGATCCAACTGGTAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTTTATGATTTTCTCCAAAGTCCGGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCTTGAAAACATTGAAACACAAAAACATTATGAAATTTTACACCTCTTGGGTTGATACTGCTAATAGGAATATCAACTTTGTTACTGAAATGTTCACCTCTGGTACACTTAGACAGTATAGGTTAAGGCACAAGAGAGTTAACATAAGAGCGGTGAAGCATTGGTGCATACAGATCCTGAGAGGACTTCTGTATCTGCATAGCCATGATCCGCCAGTGATCCATAGAGATCTCAAATGTGATAATATTTTTGTCAATGGAAATCAAGGGGAAGTCAAAATCGGGGATCTTGGCCTTGCAGCAATTCTTCGAAAATCCCATGCTGCACATTGTGTAGGAACGCCCGAGTTCATGGCACCAGAAGTATACGAAGAGTCGTATAATGAACTAGTTGACATATATTCCTTTGGAATGTGCTTATTAGAGATGGTCACATTTGAATATCCCTATAGTGAATGTACTCATCCGGCTCAAATATACAAGAAAGTTATTTCTGGTAAAAAGCCAGATGCTTTGTATAAAGTTAAGGATCCAGAAGTGCGGCAATTTGTTGATAAATGCTTGGCCACAGTGTCTCTAAGGCTTTCTGCAAAGGAACTTCTAGACGACCCTTTTCTTCGAATAGATGATTATGAATATGATTTGAGACCTGTAGATAGTGGAGAATTCGACGACTTCATTCCCCTCATCAGACAACCGCTTTTTGATTTTCATCGGAGCAATAGTAACTTCAGTAATGAATACTCCAATGGTTTTGGATATGAAGGAGACTTGTATTCTCATCCAGCTGACAATGAACATTGTGGGATTGAACTTTTCGAGCACCAAGAAGATGAACCCTTCGAACATGTCGACATAAGCATCAAGGGCAAGAAGAAAGACGACGGTAGCATATTTTTGAGACTAAGAATTTCAGATAAAGAAGGCCACGTTCGGAATATTTACTTCCCATTTGACATAGAGATGGACACGGCAATAAGCGTGGCGACTGAGATGATTGCAGAACTTGACATAACGGATCAGGATGTTACCAGCATAGCGGATATGATAGATGGAGAAATTGCTTCTTTGGTACCTGAATGGCAATCAGGACCAGGAATAGTCGAAACTCCCCGTTTTGCAGATCAAGGTTTCTGCCGCAATTGTGTGTCGAATCATACTTCAAGTGGCTCCCTCATGGATTACCTTTCGCATAATCAGGGTAACTTGCAACTTCCTGAATATTGTAAGCACGGCTGTGCCTCAATGCACGGCCGGTTCGAGGAGATTACTTTCCCATCTGAGGAGTGTGACAATCATGTGAGAGAGAATCTGAATGTATTAAACCGATCGGACAGTTTGCAGTATCAAGGAGTATGGAATCAGCATGAAAGCCGTGAACTGAGTCCGGTGGAATCTGATCAAAGTCATTCCGACGAACAAAATGAACAATTAGATAAATCAATATCAGCTGAAGATCAAGGACAGAATGTTTCGGAAAATAAGTTTCCCCCGAATGCAACAATTTCCCCAAGATATTCATCAGGAACTCATGATTTCTCCAATATCCGTTCGTTATACTGCAGTCTCAATGATAATTACGAGAAAGAGATCCAAAAGGAACTAAGATGGCTCAAAGCAAGATACCAAATGGAGTTAAGGGAACTCAAGGATCAACAACTCGGGATAACAGATAATAAATCTTCTCGTAGCAGTATCACTAACGTAGAGCACAAGACAGATTACGCCGTTACAAAAGGAGGAATCAAAACAATTCGCTCGAAACCTGTTCATAAAAGCAGCCCCGATTCGGAAACTGAAAGGGCCGAAAATCGTGAGGCGATGGAGTCCCGTGGAGAAGGTATTGTTACTGCAAAGAGTTTTTACACCGGCTCGTTGCTTCCGCATTCTCTGCACAGGACAGTTTCCCTCCCTGTTGATGCTTTTGATATATAA 2160 0.4097 MNGVTHFEEDDSEFVELDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLRHKRVNIRAVKHWCIQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCLLEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVDKCLATVSLRLSAKELLDDPFLRIDDYEYDLRPVDSGEFDDFIPLIRQPLFDFHRSNSNFSNEYSNGFGYEGDLYSHPADNEHCGIELFEHQEDEPFEHVDISIKGKKKDDGSIFLRLRISDKEGHVRNIYFPFDIEMDTAISVATEMIAELDITDQDVTSIADMIDGEIASLVPEWQSGPGIVETPRFADQGFCRNCVSNHTSSGSLMDYLSHNQGNLQLPEYCKHGCASMHGRFEEITFPSEECDNHVRENLNVLNRSDSLQYQGVWNQHESRELSPVESDQSHSDEQNEQLDKSISAEDQGQNVSENKFPPNATISPRYSSGTHDFSNIRSLYCSLNDNYEKEIQKELRWLKARYQMELRELKDQQLGITDNKSSRSSITNVEHKTDYAVTKGGIKTIRSKPVHKSSPDSETERAENREAMESRGEGIVTAKSFYTGSLLPHSLHRTVSLPVDAFDI 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01847 719 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vifa3g01847 719 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vifa3g01847 719 MobiDBLite consensus disorder prediction 662 685 - -
Vifa3g01847 719 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01847 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 638 - -
Vifa3g01847 719 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
Vifa3g01847 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vifa3g01847 719 MobiDBLite consensus disorder prediction 535 555 - -
Vifa3g01847 719 Coils Coil 607 627 - -
Vifa3g01847 719 CDD STKc_WNK 22 281 - -
Vifa3g01847 719 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Vifa3g01847 719 MobiDBLite consensus disorder prediction 556 583 - -
Vifa3g01847 719 Gene3D - 371 438 - -
Vifa3g01847 719 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01847 719 MobiDBLite consensus disorder prediction 664 685 - -
Vifa3g01847 719 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vifa3g01847 719 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01847 719 MobiDBLite consensus disorder prediction 531 583 - -
Vifa3g01847 719 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01847 Vifa-Chr3 480179835 480182817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01847 1 498 MAP Kinase Kinase Kinase AT3G22420 58.118 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa3g01847 Pkinase 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01847 K08867 - gmx:100272198 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01847 3 480179835 480182817 Vifa3g01847 3 480179835 480182817 ECH
Vifa5g03890 5 1245571347 1245574425 Vifa3g01847 3 480179835 480182817 PCT