Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01845 ATGGCTGATTCTTCAACCAACCCAAAGGATCATCAAAAAAATTCACGTCTCTATCATCCCTACCAGCACCTCAACATTCCCGTCGACAAGCTCTACAACCTCCCCACCTCGCCGGAGCATCTCTTCCCAGAAGAAGCTTCCAGAAAGCACCGTTCATGGGCCGACAACCTCCAGTACTACACCGGCACCGGCTACCTCTCGGGTTCCATCATCGGAGGCACAAGAGGAACGATTGAAGGTCTCAAGGCTGCTGAGGCAGGTGAGTCTCTTAAGATCCGAGTCAACCGTGTTCTTAACTCGGGTGGTCAAGGTGGTCGTAGACTCGGTAACTCGCTTGGGGTTTTGGGATTGATTTTTGCAGGATTGGAGAGTGCTATGATTCATGTTAGGGATACGGATGACTTGGTTAACAGCGCGGTTGCCGGACTCGGTACCGGAGTGCTTTATAAGGCTGCGGCTGGGCCTCGATCGGCTGTTATTGCTGGTGCTCTAGGTGGAATTGCGGCGGCTGTGGCAGTTGCCGGGAAACAAGCTTTTAAACGACACATTCCAATTTAA 558 0.5197 MADSSTNPKDHQKNSRLYHPYQHLNIPVDKLYNLPTSPEHLFPEEASRKHRSWADNLQYYTGTGYLSGSIIGGTRGTIEGLKAAEAGESLKIRVNRVLNSGGQGGRRLGNSLGVLGLIFAGLESAMIHVRDTDDLVNSAVAGLGTGVLYKAAAGPRSAVIAGALGGIAAAVAVAGKQAFKRHIPI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01845 185 PANTHER TIM23 27 173 IPR045238 GO:0022857
Vifa3g01845 185 Pfam Tim17/Tim22/Tim23/Pmp24 family 59 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01845 Vifa-Chr3 479256983 479257540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01845 1 181 Chloroplast and Mitochondria Gene Families AT1G17530 53.005 2.17e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01845 K17794 - gmx:100779163 271.166