Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01842 ATGTTTGATGGAGTCCCAGACCAATTCCACCAATTCATAACTCCAAGAACCTCTTCTTCATCACTACCTCTTCATTTACCTTTCCCTCTTTCAACAACACCAAATAACAACAACAACAACACCTTTCCCACTTTTGATCCTTATAATCATCATCAATTACCAACACTCCAACTTCAACCAAACAATCTCTTGCACCCATTACACCATCACAACAACAAAGATGAACAAAAAGAACAAACCACTCCTTCAATTAACAACTTCCAAATTGAAAGAGATCAACGACAAATACTACCTCAACTCGTCGATCCTTGGACTAACGACGAGGTTCTTGCACTCTTGAAGATCAGATCCAACATGGAGAATTGGTTCCCAGATTTCACCTGGGAACACGTATCAAGGAAGCTAGCTGAGATTGGATTTAAACGTAGTGCAGAGAAATGCAAAGAGAAATTTGAAGAAGAAAGTAGATTTTTCAGCAACATTAGTAATAATAATAATAATCAGAATCCGAATCAGAATCAGAATCAGAATAATTACGGTAAGAATTTTCGGTTTGTTACCGAGCTTGAAGAGCTTTATCAAGGTGGTGGTGGTGAGAATAAGCAAGACAAGATGAGGAGTGAATCGAATGACGATGATTCGAGAAGCGACGAGGTTTTGGTGATGAAGAAAGATGAAGATGAGGTGTTTGAGAGAAGTACTAGAAATGATGAGAAGAAGAGGAAAAGAGGTGGTGATAGATTTGAAGTGTTCAAGGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAAGAGATGCATAACAAGCTTATTGAGGATATGATTAAAAGAGATGAAGAGAAGTATAGTAGAGAGGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACAAGAACAAGCTATTGCTGCATTGAAATCGGAAAACAAGACAAATCCAAGCTCAACTCATCCTTCTTCTTCTACTACTTTGGCTCAACCTCGCAAATATACCGGCGGCGAGAAAGAAGATATTGGTAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAATTACAACAACAATGAAGAAAAGGAAGGAAACAACAACCACACCAACAAAGCACCACTTTGGGAGAGAATATCACAAGGGATGTTGGAGTTAGGATACAAGAGAAGCGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTATTTTAGAAAAACAAAGGATAATGCTAATAGGAAAAGGTCACTTGATTCAAGAACTTGTCCTTATTTTCATCTATTGAGCAATCTCTATAATCAAGGTAAACTTGTTCTACAATCTGAAAAGAATGAAAGCAATAACAACATGAATTTGCCAGAAGAAAATGTTGTTGTTCAAGAGAAGAAAGCTCCACAAGATGAAAACAATGGTGGTAGCGGTGAGTCTTCTGATCAAGTGGGGCCTGCATGCTGGTAG 1494 0.3835 MFDGVPDQFHQFITPRTSSSSLPLHLPFPLSTTPNNNNNNTFPTFDPYNHHQLPTLQLQPNNLLHPLHHHNNKDEQKEQTTPSINNFQIERDQRQILPQLVDPWTNDEVLALLKIRSNMENWFPDFTWEHVSRKLAEIGFKRSAEKCKEKFEEESRFFSNISNNNNNQNPNQNQNQNNYGKNFRFVTELEELYQGGGGENKQDKMRSESNDDDSRSDEVLVMKKDEDEVFERSTRNDEKKRKRGGDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKYSREEAWKKQEMEKMNKELELMAQEQAIAALKSENKTNPSSTHPSSSTTLAQPRKYTGGEKEDIGRRWPKDEVLALINLRCNYNNNEEKEGNNNHTNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDNANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSEKNESNNNMNLPEENVVVQEKKAPQDENNGGSGESSDQVGPACW 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01842 497 CDD GT1 350 420 - -
Vifa3g01842 497 Pfam Myb/SANT-like DNA-binding domain 102 169 IPR044822 -
Vifa3g01842 497 Pfam Myb/SANT-like DNA-binding domain 350 441 IPR044822 -
Vifa3g01842 497 PANTHER FI21293P1 58 479 - -
Vifa3g01842 497 MobiDBLite consensus disorder prediction 160 179 - -
Vifa3g01842 497 MobiDBLite consensus disorder prediction 458 497 - -
Vifa3g01842 497 MobiDBLite consensus disorder prediction 317 348 - -
Vifa3g01842 497 MobiDBLite consensus disorder prediction 317 338 - -
Vifa3g01842 497 ProSiteProfiles Myb-like domain profile. 351 413 IPR001005 -
Vifa3g01842 497 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Vifa3g01842 497 Gene3D - 352 418 - -
Vifa3g01842 497 Gene3D - 104 159 - -
Vifa3g01842 497 MobiDBLite consensus disorder prediction 195 243 - -
Vifa3g01842 497 SMART sant 100 157 IPR001005 -
Vifa3g01842 497 SMART sant 348 415 IPR001005 -
Vifa3g01842 497 Coils Coil 293 318 - -
Vifa3g01842 497 MobiDBLite consensus disorder prediction 201 243 - -
Vifa3g01842 497 FunFam Trihelix transcription factor GT-2 104 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01842 Vifa-Chr3 478925858 478927863 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01842 1 446 Trihelix Transcription Factor Family AT5G28300 40.175 3.24e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g01842 Myb_DNA-bind_4 7.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01842 - - tpra:123903108 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01842 3 478925858 478927863 Vifa3g01842 3 478925858 478927863 ECH
Vifa5g03897 5 1248123486 1248125077 Vifa3g01842 3 478925858 478927863 PCT