Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01840 ATGTTTGATGGAGTCCCAGACCAATTCCACCAATTCATAACTCCAAGAACCTCTTCTTCATCACTACCTCTTCATTTACCTTTCCCTCTTTCAACAACACCAAATAACAACAACAACAACACCTTTCCCACTTTTGATCCTTATAATCATCATCAATTACCAACACTCCAACTTCAACCAAACAATCTCTTGCACCCATTACACCATCACAACAACAAAGATGAACCAAAAGAACAAACCACTCCTTCAATTAACAACTTCCAAATTGAAAGAGATCAACGACAAATACTACCTCAGCTCGTCGATCCTTGGACTAACGACGAGGTTCTTGCACTCTTGAAGATCAGATCCAACATGGAGAATTGGTTCCCAGATTTCACCTGGGAACACGTATCAAGGAAGCTAGCTGAGATTGGATTTAAACGTAGTGCAGAGAAATGCAAAGAGAAATTTGAAGAAGAAAGTAGATTTTTCAGCAACATTAGTAATAATAATAATAATCAGAATCCGAATCAGAATCAGAATAATTACGGTAAGAATTTTCGGTTTGTTACTGAGCTTGAAGAGCTTTATCAAGGTGGTGGTGGTGAGAATAAGCAAGACAAGATGAGGAGTGAATCGAATGACGATGATTCGAGAAGCGACGAGGTTTTGGTGATGAAGAAAGATGAAGATGAGGTGTTTGAGAGAAGTACTAGAAATGATGAGAAGAAGAGGAAAAGAGGTGGTGATAGATTTGAAGTGTTCAAGGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAAGAGATGCATAACAAGCTTATTGAGGATATGATTAAAAGAGATGAAGAGAAGTATAGTAGAGAGGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACAAGAACAAGCTATTGCTGGTGATAGACAAGCAAATATAATTCAGTTCTTGAACAAATTCTCATCAACTACAAATTCTTCTTCCATTTTAGCTTCAATTCAAAGCATTGAAATCGGAAACCAAGACAAATCCAAGGTAATAATTACACCTAAAAATTTCTCAAATTCTACCACATTGCACTCACAAAACCCTAATCCTGAAATTCATGACAAAACTCTTCAACCAACATCTGAAAACCCTAGCTCAACTCATCCTTCTTCTTCTACTACTTTGGCTCAACCTCGCAAATATACCGGCGGCGAGAAAGAAGATATTGGTAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAATTACAACAACAATGAAGAAAAGGAAGGAAACAACAACCACACCAACAAAGCACCACTTTGGGAGAGAATATCACAAGGGATGTTGGAGTTAGGATACAAGAGAAGCGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTATTTTAGAAAAACAAAGGATAATGCTAATAGGAAAAGGTCACTTGATTCAAGAACTTGTCCTTATTTTCATCTATTGAGCAATCTCTATAATCAAGGTAAACTTGTTCTACAATCTGAAAAGAATGAAAGCAATAACAACATGAATTTGCCAGAAGAAAATGTTGTTGTTCAAGAGAAGAAAGCTCCACAAGATGAAAACAATGGTGGTAGCGGTGAGTCTTCTGATCAAGTGGGGCCTGCATGCTGGTAG 1680 0.3774 MFDGVPDQFHQFITPRTSSSSLPLHLPFPLSTTPNNNNNNTFPTFDPYNHHQLPTLQLQPNNLLHPLHHHNNKDEPKEQTTPSINNFQIERDQRQILPQLVDPWTNDEVLALLKIRSNMENWFPDFTWEHVSRKLAEIGFKRSAEKCKEKFEEESRFFSNISNNNNNQNPNQNQNNYGKNFRFVTELEELYQGGGGENKQDKMRSESNDDDSRSDEVLVMKKDEDEVFERSTRNDEKKRKRGGDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKYSREEAWKKQEMEKMNKELELMAQEQAIAGDRQANIIQFLNKFSSTTNSSSILASIQSIEIGNQDKSKVIITPKNFSNSTTLHSQNPNPEIHDKTLQPTSENPSSTHPSSSTTLAQPRKYTGGEKEDIGRRWPKDEVLALINLRCNYNNNEEKEGNNNHTNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDNANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSEKNESNNNMNLPEENVVVQEKKAPQDENNGGSGESSDQVGPACW 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01840 559 MobiDBLite consensus disorder prediction 359 400 - -
Vifa3g01840 559 MobiDBLite consensus disorder prediction 359 410 - -
Vifa3g01840 559 Gene3D - 414 480 - -
Vifa3g01840 559 Gene3D - 104 159 - -
Vifa3g01840 559 Coils Coil 291 311 - -
Vifa3g01840 559 ProSiteProfiles Myb-like domain profile. 413 475 IPR001005 -
Vifa3g01840 559 MobiDBLite consensus disorder prediction 193 241 - -
Vifa3g01840 559 MobiDBLite consensus disorder prediction 520 559 - -
Vifa3g01840 559 MobiDBLite consensus disorder prediction 199 241 - -
Vifa3g01840 559 FunFam Trihelix transcription factor GT-2 104 160 - -
Vifa3g01840 559 Pfam Myb/SANT-like DNA-binding domain 102 173 IPR044822 -
Vifa3g01840 559 Pfam Myb/SANT-like DNA-binding domain 412 503 IPR044822 -
Vifa3g01840 559 CDD GT1 412 482 - -
Vifa3g01840 559 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Vifa3g01840 559 PANTHER FI21293P1 59 541 - -
Vifa3g01840 559 SMART sant 410 477 IPR001005 -
Vifa3g01840 559 SMART sant 100 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01840 Vifa-Chr3 478837566 478839552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01840 1 508 Trihelix Transcription Factor Family AT5G28300 41.824 3.74e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g01840 Myb_DNA-bind_4 8.7e-18 CL0123