Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01838 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTCGGTTCAGCGCTTCTTGTGAGGCATAAACATGAGAAGAAAAAATATGTGTTGAAGAAGATTAGACTTGCCCGCCAAACGGAGCGTTCTCGCAGATCCGCACACCAGGAGATGGAACTTATCTCTAAATTGCGAAACCCATTTATAGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGCGGTGATATGGCGGAAACTATAAAGAAGACTAACGGTGTTCTGTTTCCTGAGGAGAAACTTTGTAAATGGCTCGTTCAACTTCTTATGGCACTTGACTACCTGCACATGAATCACATTCTACATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGGGACATACGTCTAGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCGGATATACCTTATGGTTCTAAATCAGATATTTGGTCATTGGGATGTTGTATATATGAAATGGCAGGACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGATTAGTAAGTCCATAGTGGCTCCACTACCGACAAAATATTCTAGTTCATTTCGAAGTCTGGTGAAAAGCATGCTGCGAAAAAATCCAGAGCTGAGACCCAGTGCTTCAGAGCTTCTCGGGCACCCACATCTTCAACCTTATGTTCTAAAGATCCATCTGAAACTCAATAGCCCCAGGCGAAGCACATTGCCTGTTCATCGGCGAGAGTCAAATAATGATCGGGCTCTAAATCCTAGTGTGTCTGGAGCTGATCAAGATTCTGTATGTTCTACCCTAGAAATAGGTTGTACTCCTGATCATTTGAATTCAAGAATGGCAGAATTATGTACAGGTAATAGTCGTGACATGAAATCAGTCCATAAACCTGCTGTTTCCAGAACTTCTAGTATTGCTAAGACTCCAAATCCAAAGTTCACTTCATCAAAAGTTTCTGGCACCCACAGGAAATCAATTGAACCCTCAAACAATCGCAAGGTGGTAAAGCAAACTCTTCCTGTTTCACAAAGCATCTCAAAATCTGCTCATACAAATCGTAGAGCATCATTTCCATTGTCAACAAGGAGTGGTATTCATGAGCCTCCTTGCAGGCCGAGTGTTGGTTTGCTTAGCCACGTGTCTTCACCAGATATCTCAGTCAACTCTCCCCGAATCGATAGGATAGCTGAATTCCCATTAGCATCATATGAAGATTCTTTATTCCCACTCAACAAAACGTCAACCTCTGGACAAGGTTCTTCGGGATTCCCACGTGACAATTACTCAACTGTGATAGACAAATGCACAATAGAGGTAAGCGATAGAGCCTCTACAAATCCTAAAAGTACCGATGATTGGCAGGGAATCAAGCACAGCATGTTAAAGGAAATCCACGAGGATAAAAGTGGTTCCTCTGATCAAAACGCAACGGCAGGTGCATCAAGCTACACATCTTCAGACTTGCAGCGCCGACAGTTTGACACTTCGTCTTTCCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTCCAGCAAGCAAGGTATGACGAACTTGGAGTTTTGTTAAAACCATTTGGTCCCGGCAAGGTCTCCCCAAGAGAAACCGCCATCTGGTTGAGCAAAAGCTTCAAAGGGAATTCTAACACCACAGAAGAATCCCCGTAA 1800 0.4272 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAETIKKTNGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGHKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLGHPHLQPYVLKIHLKLNSPRRSTLPVHRRESNNDRALNPSVSGADQDSVCSTLEIGCTPDHLNSRMAELCTGNSRDMKSVHKPAVSRTSSIAKTPNPKFTSSKVSGTHRKSIEPSNNRKVVKQTLPVSQSISKSAHTNRRASFPLSTRSGIHEPPCRPSVGLLSHVSSPDISVNSPRIDRIAEFPLASYEDSLFPLNKTSTSGQGSSGFPRDNYSTVIDKCTIEVSDRASTNPKSTDDWQGIKHSMLKEIHEDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKGNSNTTEESP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01838 599 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 549 - -
Vifa3g01838 599 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Vifa3g01838 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vifa3g01838 599 MobiDBLite consensus disorder prediction 380 406 - -
Vifa3g01838 599 MobiDBLite consensus disorder prediction 504 533 - -
Vifa3g01838 599 MobiDBLite consensus disorder prediction 380 398 - -
Vifa3g01838 599 MobiDBLite consensus disorder prediction 336 366 - -
Vifa3g01838 599 MobiDBLite consensus disorder prediction 276 296 - -
Vifa3g01838 599 FunFam Serine/threonine-protein kinase Nek3 86 311 - -
Vifa3g01838 599 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01838 599 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01838 599 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vifa3g01838 599 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vifa3g01838 599 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Vifa3g01838 599 MobiDBLite consensus disorder prediction 510 533 - -
Vifa3g01838 599 MobiDBLite consensus disorder prediction 331 366 - -
Vifa3g01838 599 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa3g01838 599 CDD STKc_Nek 3 258 - -
Vifa3g01838 599 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01838 Vifa-Chr3 477865566 477869820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01838 10 259 MAP Kinase Kinase Kinase AT1G53570 32.941 8.49e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa3g01838 Pkinase 2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01838 K08857 - gmx:100804898 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01838 3 477865566 477869820 Vifa3g01838 3 477865566 477869820 ECH