Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01833 ATGACTACCGTAGCAGACGCTGAGCGTGACAAATACAGCATGATAAATTTCGAAGAGACCGAGTTACGGCTCGGTCTCCCCGGTGGATCAGTGAATGATCACGCTGATTCACCGGTTAAAAGCAGTTGCGGAAAGAGAGGTTTTGCAGAAACTGCTAACATGGATTTGAAGCTTAATCTTTCTTCAACTAATGACTCTGCTTCATCTTCATCAACTATAACTTCCGGAACTGCAAACAAAGGCAAAGAGAAAACCTCCACAACCGTTACCGCACCTCCTCGCGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTCAGAAAGAACATAGTGAATGTTCAAAAGAGCAACAATGAATCCGAAGCAGAAAAAAACACAAGTGGTGTTGGAAATGGAGCATTTGTTAAGGTGAGCATGGATGGTGCACCTTATCTACGTAAGGTAGACCTTAACTTGTACAAGAGCTACCAAGAGCTGTCAGATGCGTTGGCTAAAATGTTCAGTTCTTTCACAATTGACAACTGTGGCTCCCAAGTCACCAAAGACTTTATGAATGAAAGCAAATTGATTGACCTCTTGAACGGCTCTGATTATGTACCAACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTTGTTCAATCATGCAAACGTCTTCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTAA 759 0.4348 MTTVADAERDKYSMINFEETELRLGLPGGSVNDHADSPVKSSCGKRGFAETANMDLKLNLSSTNDSASSSSTITSGTANKGKEKTSTTVTAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEAEKNTSGVGNGAFVKVSMDGAPYLRKVDLNLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01833 252 SUPERFAMILY CAD & PB1 domains 129 233 - -
Vifa3g01833 252 FunFam Auxin-responsive protein 129 244 - -
Vifa3g01833 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 239 IPR003311 GO:0005634|GO:0006355
Vifa3g01833 252 MobiDBLite consensus disorder prediction 61 93 - -
Vifa3g01833 252 MobiDBLite consensus disorder prediction 61 98 - -
Vifa3g01833 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Vifa3g01833 252 Gene3D - 130 246 - -
Vifa3g01833 252 Pfam AUX/IAA family 19 243 IPR033389 -
Vifa3g01833 252 MobiDBLite consensus disorder prediction 26 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01833 Vifa-Chr3 475256145 475258253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01833 138 242 B3 DNA Binding Superfamily AT4G23980 34.286 3.36e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa3g01833 AUX_IAA 1e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01833 K14484 - cave:132171332 333.954