Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01817 ATGAAGGTGAAACCGTCGGGATCTGCAACGACAGTTGAGCGGTGCACGACGGCTGCAAAGTCTCTGAGATCAATAGGGTTCCAAGAGAAAGGGAACCTTGACCAAGAAAAAGGCCGTTACTATTTTTTGCTCATTTCATTGCCTAATTTGATCCTTGGCGAGAAACCTGGAGGAGTCATTGCTCTTCTCGATGAAGCATGCATGTTTCCAAAGTCAACACATGAAATGTTTGCAAACAAGCTTTATCAAATGTTTAAGGATAACAAGCGCTTTATTAAGCCAAAATTTTCGCAAACAGATTTTACCATTGCTCATTATGCTGGAGAGGTGACATACCAATCTGACCAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCTAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCTGACCTTTTTCCACCACTCCCTGAAGAGACATCCAAATCTTCCAAATTTTCTTCAATAGGTTCTCGTTTTAAGCTACAACTACAGGAACTAATGGAAACATTAAGTTCTACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCACAAGCCTGCAGTTTTTGAGAATGTCAACATTAGGCATCAACTTCGCTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGTTGCCCTTTCGTTGAATTTGCAAACAGATTTGGTCTTTTTGCCCCGGAGGCCACGGAAGCAAAGTGTGATGAAAAGAATGTTTGCCAAAAGATTCTGGAAAAGACAGGGCTGAAAGGATATCAGATTGGAAAAACAAAGGTATTCTTGAGAGCTGGTCAGATGGCTGAACTAGATGCTCGGAGAGCTCAAGTACTTGGTAATGCAGCAAAAGTTATCCAACAGAACATACGGACCCATCAAGCTCGGAAACATTATCTTGCTTTGCAAAAGAAGACCATATATTTGCAGTCTCGGTGGAGAGGAAGACTGGCATTCAAACTCTATGAGAAAATGAGAAGGGAGGCTGCTATTGTGAAAATTCAAAAGAACATACGCAGTTATGAAGCTAGGAAGGCATATAAAGAACTTCATATGTCAGTACTTACTATGCAAACAGCTTTAAGAGCCATTGCTGCTCGCAAGGAGTTCAGATTTGGGATACAGACCAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCGGCTTTATATTATAAGAGGCTCAAAAAAGGCTCAATAGTTACACAATGTAGATGGAGAGGACGTTTAGCTACGGGAGAACTTAGGAAACTGAAAATGGCTGCAAGACATACTGGCGCACGTTTAGAAGCAAAGAGTAAGCATGAAATACATGTAAAGGAACTTACTAGGTGTCTCCAACAGGAAAAAGGTTTAAGGGCTGCAAGAGATACTGGCACACTTCAAGAAGGCGCACTTCAAGAAGCAAAGAGTAAGCTTGAAAAACAAGTGGAGGAGCTTACTTGGCGTCTCCAACTGGAAAAAGGTTTAAGGACAAATCTAGAAGAATACAAAGCACATGAGATAGCAAAACTGAAGAATTCATTGCAGGAGATGAAGAAAAAGGTTGATGAAACTAATGCCCTTCTCCTCTTGGAGCGAGAAGAGAATGCAAGGAAAGCTATCGAAGTAGCATCTCCTGTCATTGGAGAAGCAAATGTTCTTGTTGAAGATCCAGAGAAGTTTAAGAAACTGAGAATTGAAGTTGAGAGCCTAAAGACTTCACTCAAGTTAGAGAAACAGAAAGCCTATCACTATGAAAGGAAATATAACGAAGCTAAAATTTATTGTGAAGAAAGAAGTAAAAAATTAGAGGATACGGAGAAGAAGCTTCGCCAGCTCCAAGAATCAATGACCAGGTTTACTTCTCGGAAGACTTTATAG 1908 0.4083 MKVKPSGSATTVERCTTAAKSLRSIGFQEKGNLDQEKGRYYFLLISLPNLILGEKPGGVIALLDEACMFPKSTHEMFANKLYQMFKDNKRFIKPKFSQTDFTIAHYAGEVTYQSDQFLDKNKDYVVPEHLDLLIASKCPFVSDLFPPLPEETSKSSKFSSIGSRFKLQLQELMETLSSTEPHYIRCVKPNNLHKPAVFENVNIRHQLRCGGVLEAIRISCAGYPTRCPFVEFANRFGLFAPEATEAKCDEKNVCQKILEKTGLKGYQIGKTKVFLRAGQMAELDARRAQVLGNAAKVIQQNIRTHQARKHYLALQKKTIYLQSRWRGRLAFKLYEKMRREAAIVKIQKNIRSYEARKAYKELHMSVLTMQTALRAIAARKEFRFGIQTKASIIIQARWRCHKAALYYKRLKKGSIVTQCRWRGRLATGELRKLKMAARHTGARLEAKSKHEIHVKELTRCLQQEKGLRAARDTGTLQEGALQEAKSKLEKQVEELTWRLQLEKGLRTNLEEYKAHEIAKLKNSLQEMKKKVDETNALLLLEREENARKAIEVASPVIGEANVLVEDPEKFKKLRIEVESLKTSLKLEKQKAYHYERKYNEAKIYCEERSKKLEDTEKKLRQLQESMTRFTSRKTL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01817 635 ProSiteProfiles IQ motif profile. 339 368 IPR000048 GO:0005515
Vifa3g01817 635 ProSiteProfiles Myosin motor domain profile. 1 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01817 635 SMART MYSc_2a 2 289 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01817 635 Pfam IQ calmodulin-binding motif 341 360 IPR000048 GO:0005515
Vifa3g01817 635 Pfam IQ calmodulin-binding motif 388 408 IPR000048 GO:0005515
Vifa3g01817 635 Pfam IQ calmodulin-binding motif 316 334 IPR000048 GO:0005515
Vifa3g01817 635 Pfam IQ calmodulin-binding motif 293 311 IPR000048 GO:0005515
Vifa3g01817 635 Gene3D - 223 286 - -
Vifa3g01817 635 ProSiteProfiles IQ motif profile. 293 318 IPR000048 GO:0005515
Vifa3g01817 635 FunFam unconventional myosin-Va 293 341 - -
Vifa3g01817 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 343 IPR027417 -
Vifa3g01817 635 FunFam unconventional myosin-Va 389 437 - -
Vifa3g01817 635 ProSiteProfiles IQ motif profile. 314 342 IPR000048 GO:0005515
Vifa3g01817 635 Gene3D - 341 385 - -
Vifa3g01817 635 Gene3D - 291 340 - -
Vifa3g01817 635 Gene3D - 386 438 - -
Vifa3g01817 635 Pfam Myosin head (motor domain) 50 276 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01817 635 Coils Coil 517 544 - -
Vifa3g01817 635 Gene3D Kinesin motor domain 180 218 IPR036961 -
Vifa3g01817 635 PANTHER MYOSIN 54 623 - -
Vifa3g01817 635 Coils Coil 605 632 - -
Vifa3g01817 635 ProSiteProfiles IQ motif profile. 362 391 IPR000048 GO:0005515
Vifa3g01817 635 Gene3D Myosin VI head, motor domain, U50 subdomain 124 157 - -
Vifa3g01817 635 Coils Coil 570 590 - -
Vifa3g01817 635 Gene3D - 49 179 - -
Vifa3g01817 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 439 IPR027417 -
Vifa3g01817 635 ProSiteProfiles IQ motif profile. 387 414 IPR000048 GO:0005515
Vifa3g01817 635 SMART iq_5 338 360 IPR000048 GO:0005515
Vifa3g01817 635 SMART iq_5 386 408 IPR000048 GO:0005515
Vifa3g01817 635 SMART iq_5 409 431 IPR000048 GO:0005515
Vifa3g01817 635 SMART iq_5 313 335 IPR000048 GO:0005515
Vifa3g01817 635 SMART iq_5 361 383 IPR000048 GO:0005515
Vifa3g01817 635 SMART iq_5 290 312 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01817 Vifa-Chr3 473740715 473747387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01817 51 629 Myosins gene family AT1G54560 63.731 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01817 K10357 - gmx:100792816 822.772